RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 M0R2N6 131 aa19.17■□□□□ 0.66
LDLR-206ENST00000557958 GH2P01242 217 aa19.17■□□□□ 0.66
LDLR-206ENST00000557958 NLRP12P59046 1061 aa19.17■□□□□ 0.66
LDLR-206ENST00000557958 RRP1BQ14684 758 aaKnown RBP19.17■□□□□ 0.66
LDLR-206ENST00000557958 SEPT2Q15019 361 aa19.17■□□□□ 0.66
LDLR-206ENST00000557958 TYW1BQ6NUM6 668 aa19.17■□□□□ 0.66
LDLR-206ENST00000557958 ZSCAN30Q86W11 494 aa19.17■□□□□ 0.66
LDLR-206ENST00000557958 DCAF4Q8WV16 495 aa19.17■□□□□ 0.66
LDLR-206ENST00000557958 VAT1LQ9HCJ6 419 aa19.17■□□□□ 0.66
LDLR-206ENST00000557958 PCDHA6Q9UN73 950 aa19.17■□□□□ 0.66
LDLR-206ENST00000557958 PCDHA8Q9Y5H6 950 aa19.17■□□□□ 0.66
LDLR-206ENST00000557958 SMCO2A6NFE2 343 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 GLTPD2A6NH11 291 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 LAD1O00515 517 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 MCM7P33993 719 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 ICA1Q05084 483 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 NBPF12Q5TAG4 269 aaPredicted RBP19.16■□□□□ 0.66
LDLR-206ENST00000557958 C11orf57Q6ZUT1 292 aaPredicted RBP19.16■□□□□ 0.66
LDLR-206ENST00000557958 RASGRP2Q7LDG7 609 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 APOBEC3FQ8IUX4 373 aaKnown RBP19.16■□□□□ 0.66
LDLR-206ENST00000557958 BPIFA3Q9BQP9 254 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 UBA5Q9GZZ9 404 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 TUBE1Q9UJT0 475 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 PNMA6FA0A0J9YX94 578 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 GOLGA6L6A8MZA4 724 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 POLR2DO15514 142 aaKnown RBP19.16■□□□□ 0.66
LDLR-206ENST00000557958 MSNP26038 577 aaKnown RBP19.16■□□□□ 0.66
LDLR-206ENST00000557958 TPM4P67936 248 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 JAG1P78504 1218 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 LONRF3Q496Y0 759 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 EAPPQ56P03 285 aaPredicted RBP19.16■□□□□ 0.66
LDLR-206ENST00000557958 SPECC1Q5M775 1068 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 TEPSINQ96N21 525 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 CPVLQ9H3G5 476 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 GPCPD1Q9NPB8 672 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 PGAP2Q9UHJ9 254 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 SYNPO2Q9UMS6 1093 aa19.16■□□□□ 0.66
LDLR-206ENST00000557958 SIPA1L1O43166 1804 aa19.15■□□□□ 0.66
LDLR-206ENST00000557958 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.15■□□□□ 0.66
LDLR-206ENST00000557958 EEF2P13639 858 aaKnown RBP19.15■□□□□ 0.66
LDLR-206ENST00000557958 GRIN1Q05586 938 aa19.15■□□□□ 0.66
LDLR-206ENST00000557958 IQCB1Q15051 598 aa19.15■□□□□ 0.66
LDLR-206ENST00000557958 NONOQ15233 471 aaKnown RBP eCLIP19.15■□□□□ 0.665e-7■□□□□ 10.7
LDLR-206ENST00000557958 DCPSQ96C86 337 aaKnown RBP19.15■□□□□ 0.66
LDLR-206ENST00000557958 EPHX2P34913 555 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 TXLNAP40222 546 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 ORC2Q13416 577 aaPredicted RBP19.14■□□□□ 0.65
LDLR-206ENST00000557958 NOM1Q5C9Z4 860 aaKnown RBP19.14■□□□□ 0.65
LDLR-206ENST00000557958 DLK2Q6UY11 383 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 REXO1Q8N1G1 1221 aaKnown RBP19.14■□□□□ 0.65
LDLR-206ENST00000557958 ERCC4Q92889 916 aaPredicted RBP19.14■□□□□ 0.65
LDLR-206ENST00000557958 VWA3AA6NCI4 1184 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 DCAF8L1A6NGE4 600 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 TPM3P06753 285 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 LONP1P36776 959 aaKnown RBP19.14■□□□□ 0.65
LDLR-206ENST00000557958 SLC1A4P43007 532 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 ADCY7P51828 1080 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 POSTNQ15063 836 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 GLT8D2Q9H1C3 349 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.14■□□□□ 0.65
LDLR-206ENST00000557958 FZD1Q9UP38 647 aa19.14■□□□□ 0.65
LDLR-206ENST00000557958 TBC1D12O60347 775 aa19.13■□□□□ 0.65
LDLR-206ENST00000557958 PRKG1Q13976 671 aa19.13■□□□□ 0.65
LDLR-206ENST00000557958 ADGRF4Q8IZF3 695 aa19.13■□□□□ 0.65
LDLR-206ENST00000557958 GMCL1P1Q8NEA9 526 aa19.13■□□□□ 0.65
LDLR-206ENST00000557958 RASGRP4Q8TDF6 673 aa19.13■□□□□ 0.65
LDLR-206ENST00000557958 SYMPKQ92797 1274 aaKnown RBP19.13■□□□□ 0.65
LDLR-206ENST00000557958 TRIM5Q9C035 493 aa19.13■□□□□ 0.65
LDLR-206ENST00000557958 SMTNL1A8MU46 457 aa19.12■□□□□ 0.65
LDLR-206ENST00000557958 ZBTB5O15062 677 aa19.12■□□□□ 0.65
LDLR-206ENST00000557958 PNOCQ13519 176 aa19.12■□□□□ 0.65
LDLR-206ENST00000557958 INF2Q27J81 1249 aa19.12■□□□□ 0.65
LDLR-206ENST00000557958 DPCR1Q3MIW9 517 aa19.12■□□□□ 0.65
LDLR-206ENST00000557958 SLFN13Q68D06 897 aa19.12■□□□□ 0.65
LDLR-206ENST00000557958 SARM1Q6SZW1 724 aa19.12■□□□□ 0.65
LDLR-206ENST00000557958 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.12■□□□□ 0.65
LDLR-206ENST00000557958 L3MBTL3Q96JM7 780 aaPredicted RBP19.12■□□□□ 0.65
LDLR-206ENST00000557958 JMJD4Q9H9V9 463 aa19.12■□□□□ 0.65
LDLR-206ENST00000557958 MYH4Q9Y623 1939 aa19.12■□□□□ 0.65
LDLR-206ENST00000557958 BIN1O00499 593 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 WNT7AO00755 349 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 SMC2O95347 1197 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 PRPHP41219 470 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 SULF1Q8IWU6 871 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 TRIML1Q8N9V2 468 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 SERTAD1Q9UHV2 236 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 DACH1Q9UI36 760 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 ADM5C9JUS6 153 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 ACTN4O43707 911 aaKnown RBP19.11■□□□□ 0.65
LDLR-206ENST00000557958 SLFN14P0C7P3 912 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 DTHD1Q6ZMT9 781 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 NEK8Q86SG6 692 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 DHX40Q8IX18 779 aaKnown RBP19.11■□□□□ 0.65
LDLR-206ENST00000557958 AOPEPQ8N6M6 819 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 PDILTQ8N807 584 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 IQUBQ8NA54 791 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 SMARCE1Q969G3 411 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 GMCL1Q96IK5 515 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 CLEC11AQ9Y240 323 aa19.11■□□□□ 0.65
LDLR-206ENST00000557958 CAP2P40123 477 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms