RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 PRPF6O94906 941 aaKnown RBP8.61□□□□□ -1.03
VPS13D-211ENST00000543710 BRD1O95696 1058 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 TFCP2Q12800 502 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 USP17L1Q7RTZ2 530 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 CNOT10Q9H9A5 744 aaKnown RBP8.61□□□□□ -1.03
VPS13D-211ENST00000543710 MLXIPQ9HAP2 919 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 GBA2Q9HCG7 927 aaPredicted RBP8.61□□□□□ -1.03
VPS13D-211ENST00000543710 STAP2Q9UGK3 403 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 DPP7Q9UHL4 492 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 ASPHQ12797 758 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 BPIFA3Q9BQP9 254 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 EVA1BQ9NVM1 165 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 LEMD3Q9Y2U8 911 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 EPHX2P34913 555 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 MLLT1Q03111 559 aaPredicted RBP8.61□□□□□ -1.03
VPS13D-211ENST00000543710 ITIH3Q06033 890 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 ZNF354CQ86Y25 554 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.61□□□□□ -1.036e-6■□□□□ 8.9
VPS13D-211ENST00000543710 STK17AQ9UEE5 414 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 G3BP2Q9UN86 482 aaKnown RBP8.61□□□□□ -1.03
VPS13D-211ENST00000543710 STX8Q9UNK0 236 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 XDHP47989 1333 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 M0R2C6 588 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 RIOK3O14730 519 aaKnown RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 IGFBP4P22692 258 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 PTGS1P23219 599 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 INPP5BP32019 993 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 GTF2IP78347 998 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 PDZD4Q76G19 769 aaPredicted RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 MAGEB6Q8N7X4 407 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 KBTBD3Q8NAB2 608 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 NCAPGQ9BPX3 1015 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 MMRN2Q9H8L6 949 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 PFDN4Q9NQP4 134 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 SH3GLB2Q9NR46 395 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 ADGRB3O60242 1522 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 RAD17O75943 681 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 GAP43P17677 238 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 AFMP43652 599 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 SYT10Q6XYQ8 523 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 PPP1R21Q6ZMI0 780 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 ALDH8A1Q9H2A2 487 aaPredicted RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 PALLDQ8WX93 1383 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 MRPS9P82933 396 aaKnown RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 E2F5Q15329 346 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 BARGINQ6ZT62 677 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 TRMT2AQ8IZ69 625 aaKnown RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 VPS52Q8N1B4 723 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 C8orf58Q8NAV2 365 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 SLC52A2Q9HAB3 445 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 TFIP11Q9UBB9 837 aaKnown RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 TRIM17Q9Y577 477 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 ADCY9O60503 1353 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 TCP10L2B9ZVM9 353 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 BIN1O00499 593 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 TCP1P17987 556 aaKnown RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 GCKRQ14397 625 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 CEP85LQ5SZL2 805 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 KRT39Q6A163 491 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 OTUD6AQ7L8S5 288 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 UBLCP1Q8WVY7 318 aaPredicted RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 BICC1Q9H694 974 aaKnown RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 SUDS3Q9H7L9 328 aaPredicted RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 MIS18AQ9NYP9 233 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 COMMD10Q9Y6G5 202 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 CHD1O14646 1710 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 PFDN6O15212 129 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 TROVE2P10155 538 aaKnown RBP eCLIP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 PSMD2Q13200 908 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 ATRIPQ8WXE1 791 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 MTA3Q9BTC8 594 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 ACTR5Q9H9F9 607 aaPredicted RBP8.6□□□□□ -1.03
VPS13D-211ENST00000543710 HOMER3Q9NSC5 361 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 FBXO40Q9UH90 709 aa8.6□□□□□ -1.03
VPS13D-211ENST00000543710 PER1O15534 1290 aaPredicted RBP8.59□□□□□ -1.03
VPS13D-211ENST00000543710 TOMM70O94826 608 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 GLI2P10070 1586 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 CMA1P23946 247 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 CCT6AP40227 531 aaKnown RBP8.59□□□□□ -1.03
VPS13D-211ENST00000543710 ZBTB16Q05516 673 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 FSTL1Q12841 308 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 LDHDQ86WU2 507 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 DNAJC10Q8IXB1 793 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 CCT6BQ92526 530 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 FHDC1Q9C0D6 1143 aaPredicted RBP8.59□□□□□ -1.03
VPS13D-211ENST00000543710 FAM204AQ9H8W3 233 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 CBX8Q9HC52 389 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 ZNF215Q9UL58 517 aaPredicted RBP8.59□□□□□ -1.03
VPS13D-211ENST00000543710 SLC8A2Q9UPR5 921 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 GARSP41250 739 aaKnown RBP8.59□□□□□ -1.03
VPS13D-211ENST00000543710 NSMFQ6X4W1 530 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 ATP2A3Q93084 1043 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 FAM96AQ9H5X1 160 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 ZSWIM6Q9HCJ5 1215 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 FOXP2O15409 715 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 LMNAP02545 664 aaKnown RBP8.59□□□□□ -1.03
VPS13D-211ENST00000543710 ATF7P17544 494 aaPredicted RBP8.59□□□□□ -1.03
VPS13D-211ENST00000543710 ATXN3P54252 364 aaPredicted RBP8.59□□□□□ -1.03
VPS13D-211ENST00000543710 SLMAPQ14BN4 828 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 KRBA2Q6ZNG9 492 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms