RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 ZPR1O75312 459 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 DNM2P50570 870 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 APBA1Q02410 837 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 EARS2Q5JPH6 523 aaKnown RBP14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 NAA35Q5VZE5 725 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 CSGALNACT2Q8N6G5 542 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 RNPC3Q96LT9 517 aaKnown RBP14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 KLC4Q9NSK0 619 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 ESYT3A0FGR9 886 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 KIF1CO43896 1103 aaKnown RBP14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 NR1D1P20393 614 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 HLTFQ14527 1009 aaKnown RBP eCLIP14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 UBE3CQ15386 1083 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 WDR59Q6PJI9 974 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 PIK3AP1Q6ZUJ8 805 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 TMTC2Q8N394 836 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 STRBPQ96SI9 672 aaKnown RBP14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 DNAJC7Q99615 494 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 SH3GL2Q99962 352 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 SLC24A3Q9HC58 644 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 EXOC1Q9NV70 894 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 NFU1Q9UMS0 254 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 HYOU1Q9Y4L1 999 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 SLC4A4Q9Y6R1 1079 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 NBPF26B4DH59 902 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 MAP3K12Q12852 859 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 NBPF10Q6P3W6 841 aaKnown RBP14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 RPAINQ86UA6 219 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 NBPF15Q8N660 670 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 VEZTQ9HBM0 779 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 FRMD3A2A2Y4 597 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 GPTP24298 496 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 KLK7P49862 253 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 NLRP5P59047 1200 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 RNASE9P60153 205 aaKnown RBP14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 GUCY2DQ02846 1103 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 IFT20Q8IY31 132 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 ZNF473Q8WTR7 871 aaKnown RBP14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 DCAF5Q96JK2 942 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 TUBGCP2Q9BSJ2 902 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 NCK2O43639 380 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 PRKAB2O43741 272 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 TCP1P17987 556 aaKnown RBP14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 ELF1P32519 619 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 TCIRG1Q13488 830 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 C2CD5Q86YS7 1000 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 MMGT1Q8N4V1 131 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 HELBQ8NG08 1087 aaPredicted RBP14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 ZNF622Q969S3 477 aaKnown RBP eCLIP14.29□□□□□ -0.122e-10■□□□□ 9
SFSWAP-209ENST00000540469 PYM1Q9BRP8 204 aaKnown RBP14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 CAPN6Q9Y6Q1 641 aa14.29□□□□□ -0.12
SFSWAP-209ENST00000540469 ATF3P18847 181 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 E2F5Q15329 346 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 CCDC170Q8IYT3 715 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 MIGA1Q8NAN2 632 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 OSBPL9Q96SU4 736 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 NOC4LQ9BVI4 516 aaKnown RBP14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 EPN3Q9H201 632 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 EPB41L5Q9HCM4 733 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 PPP1R37O75864 691 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 FSBPO95073 299 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 EZRP15311 586 aaKnown RBP14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 EEF1GP26641 437 aaKnown RBP14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 PHKA1P46020 1223 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 HDLBPQ00341 1268 aaKnown RBP14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 CCDC47Q96A33 483 aaKnown RBP14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 NUP58Q9BVL2 599 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 ZBED6P86452 979 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 PAK2Q13177 524 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 CREG2Q8IUH2 290 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 CABLES1Q8TDN4 633 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 ZKSCAN4Q969J2 545 aaPredicted RBP14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 CCT8L2Q96SF2 557 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 MST1RQ04912 1400 aa14.28□□□□□ -0.12
SFSWAP-209ENST00000540469 NWD2Q9ULI1 1742 aa14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 A0A1W2PQC6 194 aa14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 WNT7AO00755 349 aa14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 HEXIM1O94992 359 aaKnown RBP14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 SKOR1P84550 965 aa14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 TDRD12Q587J7 1177 aaKnown RBP14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 NLRP14Q86W24 1093 aa14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 CCDC13Q8IYE1 715 aa14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 RNF26Q9BY78 433 aaPredicted RBP14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 RNF41Q9H4P4 317 aaPredicted RBP14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 EPB41L4AQ9HCS5 686 aaPredicted RBP14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 KDM6AO15550 1401 aaPredicted RBP14.27□□□□□ -0.12
SFSWAP-209ENST00000540469 BUB1O43683 1085 aa14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 CATIPQ7Z7H3 387 aa14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 IQCA1Q86XH1 822 aa14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 MMRN2Q9H8L6 949 aa14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 FAM207AQ9NSI2 230 aaPredicted RBP14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 C4AP0C0L4 1744 aa14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 C4BP0C0L5 1744 aa14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 PLEKP08567 350 aaPredicted RBP14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 CLNS1AP54105 237 aaKnown RBP14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 SNCBQ16143 134 aa14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 CCDC178Q5BJE1 867 aa14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 KIRREL3Q8IZU9 778 aa14.27□□□□□ -0.13
SFSWAP-209ENST00000540469 TNKSO95271 1327 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms