RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PRR29P0C7W0 189 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 PDCP20941 246 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 DNM1Q05193 864 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 SF3A1Q15459 793 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 CCDC183Q5T5S1 534 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 SGMS1Q86VZ5 419 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 WDR33Q9C0J8 1336 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 NAV1Q8NEY1 1877 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 CALM1P0DP23 149 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 CALM2P0DP24 149 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 CALM3P0DP25 149 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 PDHBP11177 359 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 IREB2P48200 963 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 RAD51AP2Q09MP3 1159 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 VGLL4Q14135 290 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 USP50Q70EL3 339 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 XBP1P17861 261 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 NR5A1Q13285 461 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 DHX8Q14562 1220 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 KMT5BQ4FZB7 885 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 KRT40Q6A162 431 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 FBXO38Q6PIJ6 1188 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 SYT10Q6XYQ8 523 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 MTMR14Q8NCE2 650 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 KIAA1524Q8TCG1 905 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 SLC10A4Q96EP9 437 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 RRP36Q96EU6 259 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 RASSF4Q9H2L5 321 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 FAM217BQ9NTX9 383 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 POTECB2RU33 542 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 CCDC192P0DO97 292 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 BMP3P12645 472 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 FDPSP14324 419 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 CCDC178Q5BJE1 867 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 JAKMIP3Q5VZ66 844 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 ISM2Q6H9L7 571 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 FCHSD1Q86WN1 690 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 EHD4Q9H223 541 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 KCNF1Q9H3M0 494 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 GOPCQ9HD26 462 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 BTBD18B2RXH4 712 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 SEC31AO94979 1220 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 ZSCAN22P10073 491 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 YY1P25490 414 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 DDIT3P35638 169 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 PTPN21Q16825 1174 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 TMTC3Q6ZXV5 915 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 ARMC9Q7Z3E5 817 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 KIF18AQ8NI77 898 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 ZBED3Q96IU2 234 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 TMOD4Q9NZQ9 345 aa9.86□□□□□ -0.83
LIMCH1-209ENST00000509277 LAMA4Q16363 1823 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 DDAH1O94760 285 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 HUNKP57058 714 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 UBXN2AP68543 259 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 ARHGAP29Q52LW3 1261 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 TRMT1LQ7Z2T5 733 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 FAM212AQ96EL1 285 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 INTS4Q96HW7 963 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 DNAJC25Q9H1X3 360 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 ARFGEF1Q9Y6D6 1849 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 GABPB1Q06547 395 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 KIAA1755Q5JYT7 1200 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 DIS3L2Q8IYB7 885 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 TNMDQ9H2S6 317 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 RBM28Q9NW13 759 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 MAD2L2Q9UI95 211 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 SBF1O95248 1867 aa9.85□□□□□ -0.83
LIMCH1-209ENST00000509277 MARCH6O60337 910 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 USP2O75604 605 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 URI1O94763 535 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 MAP3K9P80192 1104 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 ANO6Q4KMQ2 910 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 TATDN1Q6P1N9 297 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 CCAR1Q8IX12 1150 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 ADGRF4Q8IZF3 695 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 OXER1Q8TDS5 423 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 HOOK2Q96ED9 719 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 BIN2Q9UBW5 565 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 MTMR6Q9Y217 621 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 FAM205CA6NFA0 338 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 USP27XA6NNY8 438 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 DEXIO95424 95 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 F13A1P00488 732 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 CFBP00751 764 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 ALAS1P13196 640 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 GPS2Q13227 327 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 UBE2SQ16763 222 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 HSP90AA4PQ58FG1 418 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 FKBP1CQ5VVH2 108 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 SCYL3Q8IZE3 742 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 GOLGA6L1Q8N7Z2 621 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 C2orf69Q8N8R5 385 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 KLRG1Q96E93 195 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 MAST2Q6P0Q8 1798 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 IRF6O14896 467 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 CYTH3O43739 400 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 SMC2O95347 1197 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 SKILP12757 684 aa9.84□□□□□ -0.83
LIMCH1-209ENST00000509277 IFNAR1P17181 557 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms