RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PCDHA5Q9Y5H7 936 aa5.36□□□□□ -1.55
NUP54-208ENST00000508604 ZNF205O95201 554 aa5.35□□□□□ -1.55
NUP54-208ENST00000508604 GARTP22102 1010 aa5.35□□□□□ -1.55
NUP54-208ENST00000508604 NCKAP1LP55160 1127 aa5.35□□□□□ -1.55
NUP54-208ENST00000508604 CBX2Q14781 532 aaPredicted RBP5.35□□□□□ -1.55
NUP54-208ENST00000508604 KIR3DS1Q14943 382 aa5.35□□□□□ -1.55
NUP54-208ENST00000508604 HLA-DQA1Q5Y7H0 255 aa5.35□□□□□ -1.55
NUP54-208ENST00000508604 CWF19L1Q69YN2 538 aaKnown RBP5.35□□□□□ -1.55
NUP54-208ENST00000508604 FBXL19Q6PCT2 694 aa5.35□□□□□ -1.55
NUP54-208ENST00000508604 ATG4CQ96DT6 458 aa5.35□□□□□ -1.55
NUP54-208ENST00000508604 ADAM7Q9H2U9 754 aa5.35□□□□□ -1.55
NUP54-208ENST00000508604 TNFRSF12AQ9NP84 129 aa5.35□□□□□ -1.55
NUP54-208ENST00000508604 PRR13Q9NZ81 148 aa5.35□□□□□ -1.55
NUP54-208ENST00000508604 VAV1P15498 845 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 MCM4P33991 863 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 MAPKAPK2P49137 400 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 CAP1Q01518 475 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 RPTNQ6XPR3 784 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 GK5Q6ZS86 529 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 JAMLQ86YT9 394 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 RGS22Q8NE09 1264 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 BDH2Q9BUT1 245 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 BCL11AQ9H165 835 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 EHMT1Q9H9B1 1298 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 AP5S1Q9NUS5 200 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 USP40Q9NVE5 1235 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 IMPACTQ9P2X3 320 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 MINPP1Q9UNW1 487 aa5.34□□□□□ -1.55
NUP54-208ENST00000508604 GSNP06396 782 aa5.34□□□□□ -1.56
NUP54-208ENST00000508604 ZNF165P49910 485 aa5.34□□□□□ -1.56
NUP54-208ENST00000508604 ZXDCQ2QGD7 858 aaPredicted RBP5.34□□□□□ -1.56
NUP54-208ENST00000508604 DHRS1Q96LJ7 313 aa5.34□□□□□ -1.56
NUP54-208ENST00000508604 SLC6A18Q96N87 628 aa5.34□□□□□ -1.56
NUP54-208ENST00000508604 PALD1Q9ULE6 856 aa5.34□□□□□ -1.56
NUP54-208ENST00000508604 FAN1Q9Y2M0 1017 aa5.34□□□□□ -1.56
NUP54-208ENST00000508604 GREM1O60565 184 aa5.33□□□□□ -1.56
NUP54-208ENST00000508604 AUHQ13825 339 aaKnown RBP5.33□□□□□ -1.56
NUP54-208ENST00000508604 PLEKHN1Q494U1 663 aaPredicted RBP5.33□□□□□ -1.56
NUP54-208ENST00000508604 GGNQ86UU5 652 aa5.33□□□□□ -1.56
NUP54-208ENST00000508604 REXO1Q8N1G1 1221 aaKnown RBP5.33□□□□□ -1.56
NUP54-208ENST00000508604 ZNF296Q8WUU4 475 aaPredicted RBP5.33□□□□□ -1.56
NUP54-208ENST00000508604 ANTXR1Q9H6X2 564 aa5.33□□□□□ -1.56
NUP54-208ENST00000508604 KCNQ5Q9NR82 932 aa5.33□□□□□ -1.56
NUP54-208ENST00000508604 GSTM1P09488 218 aa5.32□□□□□ -1.56
NUP54-208ENST00000508604 NME1P15531 152 aaKnown RBP5.32□□□□□ -1.56
NUP54-208ENST00000508604 ZNF200P98182 395 aaPredicted RBP5.32□□□□□ -1.56
NUP54-208ENST00000508604 NFKB2Q00653 900 aa5.32□□□□□ -1.56
NUP54-208ENST00000508604 APOBRQ0VD83 1088 aa5.32□□□□□ -1.56
NUP54-208ENST00000508604 SEZ6Q53EL9 994 aa5.32□□□□□ -1.56
NUP54-208ENST00000508604 UBXN11Q5T124 520 aa5.32□□□□□ -1.56
NUP54-208ENST00000508604 CRTC3Q6UUV7 619 aa5.32□□□□□ -1.56
NUP54-208ENST00000508604 ERMP1Q7Z2K6 904 aa5.32□□□□□ -1.56
NUP54-208ENST00000508604 FBXO33Q7Z6M2 555 aa5.32□□□□□ -1.56
NUP54-208ENST00000508604 JMJD8Q96S16 334 aa5.32□□□□□ -1.56
NUP54-208ENST00000508604 DBR1Q9UK59 544 aaKnown RBP5.32□□□□□ -1.56
NUP54-208ENST00000508604 CYBBP04839 570 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 CTSKP43235 329 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 NOP2P46087 812 aaKnown RBP5.31□□□□□ -1.56
NUP54-208ENST00000508604 LIMS1P48059 325 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 SLURP1P55000 103 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 PAQR3Q6TCH7 311 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 CYP2R1Q6VVX0 501 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 TMEM192Q8IY95 271 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 CCDC144CPQ8IYA2 1237 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 GPR20Q99678 358 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 IRS2Q9Y4H2 1338 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 TNFRSF10CO14798 259 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 FFAR3O14843 346 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 EFEMP1Q12805 493 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 RTP5Q14D33 572 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 NOL9Q5SY16 702 aaKnown RBP5.31□□□□□ -1.56
NUP54-208ENST00000508604 BICRALQ6AI39 1079 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 HS2ST1Q7LGA3 356 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 USP48Q86UV5 1035 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 C7orf61Q8IZ16 206 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 TP53I13Q8NBR0 393 aaPredicted RBP5.31□□□□□ -1.56
NUP54-208ENST00000508604 TMPRSS5Q9H3S3 457 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 COPRSQ9NQ92 184 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 SUSD2Q9UGT4 822 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 GGT7Q9UJ14 662 aa5.31□□□□□ -1.56
NUP54-208ENST00000508604 CNOT11Q9UKZ1 510 aaKnown RBP5.31□□□□□ -1.56
NUP54-208ENST00000508604 K7ESM1 405 aa5.3□□□□□ -1.56
NUP54-208ENST00000508604 ERCC3P19447 782 aa5.3□□□□□ -1.56
NUP54-208ENST00000508604 MVKQ03426 396 aa5.3□□□□□ -1.56
NUP54-208ENST00000508604 CLCQ05315 142 aa5.3□□□□□ -1.56
NUP54-208ENST00000508604 ZFYVE27Q5T4F4 411 aa5.3□□□□□ -1.56
NUP54-208ENST00000508604 DNAJC14Q6Y2X3 702 aaPredicted RBP5.3□□□□□ -1.56
NUP54-208ENST00000508604 LSRQ86X29 649 aaPredicted RBP5.3□□□□□ -1.56
NUP54-208ENST00000508604 NKD1Q969G9 470 aa5.3□□□□□ -1.56
NUP54-208ENST00000508604 PMF1-BGLAPU3KQ54 211 aa5.3□□□□□ -1.56
NUP54-208ENST00000508604 SRGAP3O43295 1099 aa5.29□□□□□ -1.56
NUP54-208ENST00000508604 MSL3P1P0C860 447 aa5.29□□□□□ -1.56
NUP54-208ENST00000508604 IGFBP6P24592 240 aaPredicted RBP5.29□□□□□ -1.56
NUP54-208ENST00000508604 ZNF827Q17R98 1081 aa5.29□□□□□ -1.56
NUP54-208ENST00000508604 PDLIM7Q9NR12 457 aa5.29□□□□□ -1.56
NUP54-208ENST00000508604 UBP1Q9NZI7 540 aa5.29□□□□□ -1.56
NUP54-208ENST00000508604 SUCOQ9UBS9 1254 aaKnown RBP5.29□□□□□ -1.56
NUP54-208ENST00000508604 MEIS3P2A8K0S8 358 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 TBC1D8O95759 1140 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 DBHP09172 617 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms