RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 BMP2KLQ5H9B9 411 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 CTR9Q6PD62 1173 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 MIGA2Q7L4E1 593 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 ERO1BQ86YB8 467 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 MAPKAPK5Q8IW41 473 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 SLC10A4Q96EP9 437 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 WNK4Q96J92 1243 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 SEC62Q99442 399 aaKnown RBP8.05□□□□□ -1.12
VPS52-219ENST00000493379 FSD1Q9BTV5 496 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 ARMT1Q9H993 441 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 SERPINB13Q9UIV8 391 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 PALD1Q9ULE6 856 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 KCNH4Q9UQ05 1017 aa8.05□□□□□ -1.12
VPS52-219ENST00000493379 ZMYM6O95789 1325 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 USP17L12C9JPN9 530 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 USP17L21D6R901 530 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 M0R2C6 588 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 CXCL11O14625 94 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 HLA-DOAP06340 250 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 PTPRAP18433 802 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 CHMLP26374 656 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 CTGFP29279 349 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 INPP5BP32019 993 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 USP5P45974 858 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 VGLL4Q14135 290 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 RRP1BQ14684 758 aaKnown RBP8.04□□□□□ -1.12
VPS52-219ENST00000493379 SCYL3Q8IZE3 742 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 IFNL3Q8IZI9 196 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 SDR42E1Q8WUS8 393 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 FAM227BQ96M60 508 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 MTRQ99707 1265 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 ANAPC4Q9UJX5 808 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 AFG3L2Q9Y4W6 797 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 SLC4A4Q9Y6R1 1079 aa8.04□□□□□ -1.12
VPS52-219ENST00000493379 KMT2BQ9UMN6 2715 aaPredicted RBP8.03□□□□□ -1.12
VPS52-219ENST00000493379 C5orf42Q9H799 3197 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 ATRXP46100 2492 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 ROBO3Q96MS0 1386 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 A0A0D9SFI3 127 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 CARNS1A5YM72 827 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 POTEMA6NI47 508 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 BRD1O95696 1058 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 TFRCP02786 760 aaKnown RBP8.03□□□□□ -1.12
VPS52-219ENST00000493379 SLURP2P0DP57 97 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 HSPD1P10809 573 aaKnown RBP8.03□□□□□ -1.12
VPS52-219ENST00000493379 GRK4P32298 578 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 SHMT1P34896 483 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 NT5C2P49902 561 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 PPIL2Q13356 520 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 C16orf86Q6ZW13 317 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 ZSCAN29Q8IWY8 852 aaPredicted RBP8.03□□□□□ -1.12
VPS52-219ENST00000493379 FAM174AQ8TBP5 190 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 ATXN2LQ8WWM7 1075 aaKnown RBP8.03□□□□□ -1.12
VPS52-219ENST00000493379 ZKSCAN4Q969J2 545 aaPredicted RBP8.03□□□□□ -1.12
VPS52-219ENST00000493379 RILPL2Q969X0 211 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 CCDC17Q96LX7 622 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 WRNIP1Q96S55 665 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 WDR18Q9BV38 432 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 BCL11AQ9H165 835 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 VRTNQ9H8Y1 702 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.03□□□□□ -1.12
VPS52-219ENST00000493379 EPB41L4AQ9HCS5 686 aaPredicted RBP8.03□□□□□ -1.12
VPS52-219ENST00000493379 ZCCHC17Q9NP64 241 aaKnown RBP8.03□□□□□ -1.12
VPS52-219ENST00000493379 MCM9Q9NXL9 1143 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 ARPP21Q9UBL0 812 aaPredicted RBP8.03□□□□□ -1.12
VPS52-219ENST00000493379 BIN2Q9UBW5 565 aaPredicted RBP8.03□□□□□ -1.12
VPS52-219ENST00000493379 SWAP70Q9UH65 585 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 CSADQ9Y600 493 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 RAD50Q92878 1312 aa8.03□□□□□ -1.12
VPS52-219ENST00000493379 UNC79Q9P2D8 2635 aa8.02□□□□□ -1.12
VPS52-219ENST00000493379 FOCADQ5VW36 1801 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 FGAP02671 866 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 ASNSP08243 561 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 SKIP12755 728 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 GUCY1A2P33402 732 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 NOVP48745 357 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 MFAP1P55081 439 aaKnown RBP8.02□□□□□ -1.13
VPS52-219ENST00000493379 MCCD1P59942 119 aaPredicted RBP8.02□□□□□ -1.13
VPS52-219ENST00000493379 JAG1P78504 1218 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 FOXK2Q01167 660 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 NMIQ13287 307 aaPredicted RBP8.02□□□□□ -1.13
VPS52-219ENST00000493379 MOGSQ13724 837 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 ARHGEF6Q15052 776 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 PTCRAQ6ISU1 281 aaPredicted RBP8.02□□□□□ -1.13
VPS52-219ENST00000493379 ZNF589Q86UQ0 364 aaPredicted RBP8.02□□□□□ -1.13
VPS52-219ENST00000493379 ZNF592Q92610 1267 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 DSCC1Q9BVC3 393 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 IL25Q9H293 177 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 THEGQ9P2T0 379 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 MYO9BQ13459 2157 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 CCDC171Q6TFL3 1326 aa8.02□□□□□ -1.13
VPS52-219ENST00000493379 REV3LO60673 3130 aa8.01□□□□□ -1.13
VPS52-219ENST00000493379 USP17L5A8MUK1 530 aa8.01□□□□□ -1.13
VPS52-219ENST00000493379 SGSM2O43147 1006 aa8.01□□□□□ -1.13
VPS52-219ENST00000493379 POLR3DP05423 398 aaPredicted RBP8.01□□□□□ -1.13
VPS52-219ENST00000493379 PCP11498 1178 aaKnown RBP8.01□□□□□ -1.13
VPS52-219ENST00000493379 CDK8P49336 464 aa8.01□□□□□ -1.13
VPS52-219ENST00000493379 GTF2A2P52657 109 aa8.01□□□□□ -1.13
VPS52-219ENST00000493379 MRPS5P82675 430 aaKnown RBP8.01□□□□□ -1.13
VPS52-219ENST00000493379 LACTBP83111 547 aaPredicted RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms