RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 MSL3Q8N5Y2 521 aaKnown RBP17.72■□□□□ 0.43
USP39-217ENST00000491659 AGBL1Q96MI9 1066 aa17.72■□□□□ 0.43
USP39-217ENST00000491659 ZSCAN10Q96SZ4 725 aaPredicted RBP17.72■□□□□ 0.43
USP39-217ENST00000491659 KAT14Q9H8E8 782 aa17.72■□□□□ 0.43
USP39-217ENST00000491659 GPCPD1Q9NPB8 672 aa17.72■□□□□ 0.43
USP39-217ENST00000491659 DNAJC25-GNG10A0A024R161 153 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 SGSM2O43147 1006 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 SLC16A2P36021 539 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 ZNF543Q08ER8 600 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 TRDNQ13061 729 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 PRAMEF19Q5SWL8 479 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 TTBK2Q6IQ55 1244 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 BTNL9Q6UXG8 535 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 TRERF1Q96PN7 1200 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 UBAC1Q9BSL1 405 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 RANBP17Q9H2T7 1088 aaKnown RBP17.71■□□□□ 0.43
USP39-217ENST00000491659 CCPG1Q9ULG6 757 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 CNPY2Q9Y2B0 182 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 U3KPZ7 1027 aaPredicted RBP17.71■□□□□ 0.43
USP39-217ENST00000491659 MCM3APO60318 1980 aa17.71■□□□□ 0.43
USP39-217ENST00000491659 TNKSO95271 1327 aa17.71■□□□□ 0.42
USP39-217ENST00000491659 SYNGAP1Q96PV0 1343 aa17.71■□□□□ 0.42
USP39-217ENST00000491659 DNM1LO00429 736 aa17.7■□□□□ 0.42
USP39-217ENST00000491659 ICAM1P05362 532 aa17.7■□□□□ 0.42
USP39-217ENST00000491659 SNHG28P0DPA3 235 aa17.7■□□□□ 0.42
USP39-217ENST00000491659 SNAP25P60880 206 aa17.7■□□□□ 0.42
USP39-217ENST00000491659 GPATCH4Q5T3I0 446 aaKnown RBP17.7■□□□□ 0.42
USP39-217ENST00000491659 ANO1Q5XXA6 986 aa17.7■□□□□ 0.42
USP39-217ENST00000491659 ZNF467Q7Z7K2 595 aaPredicted RBP17.7■□□□□ 0.42
USP39-217ENST00000491659 ARRDC4Q8NCT1 418 aa17.7■□□□□ 0.42
USP39-217ENST00000491659 PNMA1Q8ND90 353 aa17.7■□□□□ 0.42
USP39-217ENST00000491659 PFASO15067 1338 aa17.7■□□□□ 0.42
USP39-217ENST00000491659 LRRC37A2A6NM11 1700 aa17.69■□□□□ 0.42
USP39-217ENST00000491659 COL6A1P12109 1028 aa17.69■□□□□ 0.42
USP39-217ENST00000491659 PTH1RQ03431 593 aa17.69■□□□□ 0.42
USP39-217ENST00000491659 MAMDC4Q6UXC1 1216 aa17.69■□□□□ 0.42
USP39-217ENST00000491659 C7orf61Q8IZ16 206 aa17.69■□□□□ 0.42
USP39-217ENST00000491659 ENAHQ8N8S7 591 aaPredicted RBP17.69■□□□□ 0.42
USP39-217ENST00000491659 A1CFQ9NQ94 594 aaKnown RBP17.69■□□□□ 0.42
USP39-217ENST00000491659 ZSWIM5Q9P217 1185 aa17.69■□□□□ 0.42
USP39-217ENST00000491659 PNMA2Q9UL42 364 aa17.69■□□□□ 0.42
USP39-217ENST00000491659 MYH6P13533 1939 aa17.68■□□□□ 0.42
USP39-217ENST00000491659 KBTBD13C9JR72 458 aa17.68■□□□□ 0.42
USP39-217ENST00000491659 POTEB2H3BUK9 544 aa17.68■□□□□ 0.42
USP39-217ENST00000491659 RARBP10826 455 aa17.68■□□□□ 0.42
USP39-217ENST00000491659 AKR1A1P14550 325 aa17.68■□□□□ 0.42
USP39-217ENST00000491659 KIAA1211Q6ZU35 1233 aa17.68■□□□□ 0.42
USP39-217ENST00000491659 RALYLQ86SE5 291 aaKnown RBP17.68■□□□□ 0.42
USP39-217ENST00000491659 ANKS1AQ92625 1134 aa17.68■□□□□ 0.42
USP39-217ENST00000491659 ZHX1Q9UKY1 873 aaPredicted RBP17.68■□□□□ 0.42
USP39-217ENST00000491659 LCTP09848 1927 aa17.68■□□□□ 0.42
USP39-217ENST00000491659 SMCHD1A6NHR9 2005 aa17.67■□□□□ 0.42
USP39-217ENST00000491659 MYCNP04198 464 aaPredicted RBP17.67■□□□□ 0.42
USP39-217ENST00000491659 CYP21A2P08686 494 aa17.67■□□□□ 0.42
USP39-217ENST00000491659 ZNF865P0CJ78 1059 aaPredicted RBP17.67■□□□□ 0.42
USP39-217ENST00000491659 ASPRV1Q53RT3 343 aa17.67■□□□□ 0.42
USP39-217ENST00000491659 IFIT1BQ5T764 474 aaKnown RBP17.67■□□□□ 0.42
USP39-217ENST00000491659 CEP290O15078 2479 aa17.66■□□□□ 0.42
USP39-217ENST00000491659 SNAI1O95863 264 aaPredicted RBP17.66■□□□□ 0.42
USP39-217ENST00000491659 GOLGA8HP0CJ92 632 aa17.66■□□□□ 0.42
USP39-217ENST00000491659 TAL1P17542 331 aaPredicted RBP17.66■□□□□ 0.42
USP39-217ENST00000491659 BMP2KLQ5H9B9 411 aa17.66■□□□□ 0.42
USP39-217ENST00000491659 MUM1L1Q5H9M0 696 aa17.66■□□□□ 0.42
USP39-217ENST00000491659 GJC2Q5T442 439 aaPredicted RBP17.66■□□□□ 0.42
USP39-217ENST00000491659 NSMFQ6X4W1 530 aa17.66■□□□□ 0.42
USP39-217ENST00000491659 ARMCX2Q7L311 632 aa17.66■□□□□ 0.42
USP39-217ENST00000491659 FAM133AQ8N9E0 248 aa17.66■□□□□ 0.42
USP39-217ENST00000491659 CCDC136Q96JN2 1154 aa17.66■□□□□ 0.42
USP39-217ENST00000491659 FGD4Q96M96 766 aa17.66■□□□□ 0.42
USP39-217ENST00000491659 SENP6Q9GZR1 1112 aaPredicted RBP17.66■□□□□ 0.42
USP39-217ENST00000491659 XPNPEP3Q9NQH7 507 aa17.66■□□□□ 0.42
USP39-217ENST00000491659 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.66■□□□□ 0.42
USP39-217ENST00000491659 NEFLP07196 543 aa17.65■□□□□ 0.42
USP39-217ENST00000491659 PARP1P09874 1014 aaKnown RBP17.65■□□□□ 0.42
USP39-217ENST00000491659 CNTN2Q02246 1040 aa17.65■□□□□ 0.42
USP39-217ENST00000491659 CHRDL2Q6WN34 429 aa17.65■□□□□ 0.42
USP39-217ENST00000491659 CYB5R4Q7L1T6 521 aa17.65■□□□□ 0.42
USP39-217ENST00000491659 NCOA7Q8NI08 942 aa17.65■□□□□ 0.42
USP39-217ENST00000491659 MAP4K1Q92918 833 aa17.65■□□□□ 0.42
USP39-217ENST00000491659 ABHD16BQ9H3Z7 469 aa17.65■□□□□ 0.42
USP39-217ENST00000491659 FAM184BQ9ULE4 1060 aa17.65■□□□□ 0.42
USP39-217ENST00000491659 RBM8AQ9Y5S9 174 aaKnown RBP17.65■□□□□ 0.42
USP39-217ENST00000491659 WDR19Q8NEZ3 1342 aa17.65■□□□□ 0.42
USP39-217ENST00000491659 ERICH2A1L162 156 aa17.64■□□□□ 0.41
USP39-217ENST00000491659 ASB14A6NK59 587 aa17.64■□□□□ 0.41
USP39-217ENST00000491659 E7EWF7 191 aa17.64■□□□□ 0.41
USP39-217ENST00000491659 ACVR2BQ13705 512 aa17.64■□□□□ 0.41
USP39-217ENST00000491659 SART3Q15020 963 aaKnown RBP17.64■□□□□ 0.41
USP39-217ENST00000491659 LRRC41Q15345 812 aa17.64■□□□□ 0.41
USP39-217ENST00000491659 LRRC26Q2I0M4 334 aa17.64■□□□□ 0.41
USP39-217ENST00000491659 HABP4Q5JVS0 413 aaKnown RBP17.64■□□□□ 0.41
USP39-217ENST00000491659 RNF180Q86T96 592 aa17.64■□□□□ 0.41
USP39-217ENST00000491659 CCDC144CPQ8IYA2 1237 aa17.64■□□□□ 0.41
USP39-217ENST00000491659 ESYT1Q9BSJ8 1104 aa17.64■□□□□ 0.41
USP39-217ENST00000491659 CYP39A1Q9NYL5 469 aa17.64■□□□□ 0.41
USP39-217ENST00000491659 COLQQ9Y215 455 aaPredicted RBP17.64■□□□□ 0.41
USP39-217ENST00000491659 DHX16O60231 1041 aaKnown RBP17.63■□□□□ 0.41
USP39-217ENST00000491659 SEC23AQ15436 765 aa17.63■□□□□ 0.41
USP39-217ENST00000491659 CASC1Q6TDU7 716 aa17.63■□□□□ 0.41
USP39-217ENST00000491659 SKAP1Q86WV1 359 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 802.9 ms