RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 EIF3CQ99613 913 aaKnown RBP8.74□□□□□ -1.01
USP4-211ENST00000485450 ARGLU1Q9NWB6 273 aaPredicted RBP8.74□□□□□ -1.01
USP4-211ENST00000485450 ABCF2Q9UG63 623 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 JAG2Q9Y219 1238 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 MRVI1Q9Y6F6 885 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 CLRN2A0PK11 232 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 C19orf81C9J6K1 198 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 PRKAB2O43741 272 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 FMR1Q06787 632 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP4-211ENST00000485450 NOGQ13253 232 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 SEC23AQ15436 765 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 FILIP1Q7Z7B0 1213 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 LRRC8AQ8IWT6 810 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 REPS2Q8NFH8 660 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 GTF3C2Q8WUA4 911 aaPredicted RBP8.74□□□□□ -1.01
USP4-211ENST00000485450 PIK3R5Q8WYR1 880 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 MORF4L1Q9UBU8 362 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 ZBTB21Q9ULJ3 1066 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 TMX2Q9Y320 296 aa8.74□□□□□ -1.01
USP4-211ENST00000485450 FGAP02671 866 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 IVLP07476 585 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 ACTN2P35609 894 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 ECE1P42892 770 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 VEGFBP49765 207 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 PPARAQ07869 468 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 GRIK3Q13003 919 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 TMEM179Q6ZVK1 233 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 MTMR8Q96EF0 704 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 GMCL1Q96IK5 515 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 TTC14Q96N46 770 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 CSRNP1Q96S65 589 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 SEC62Q99442 399 aaKnown RBP8.73□□□□□ -1.01
USP4-211ENST00000485450 MYH6P13533 1939 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 KIAA1217Q5T5P2 1943 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 CDK8P49336 464 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 EAPPQ56P03 285 aaPredicted RBP8.73□□□□□ -1.01
USP4-211ENST00000485450 VPS53Q5VIR6 699 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 PPM1EQ8WY54 764 aa8.73□□□□□ -1.01
USP4-211ENST00000485450 TCP10L2B9ZVM9 353 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 ZSCAN22P10073 491 aaPredicted RBP8.72□□□□□ -1.01
USP4-211ENST00000485450 OAS2P29728 719 aaKnown RBP8.72□□□□□ -1.01
USP4-211ENST00000485450 HSPA4P34932 840 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 VASPP50552 380 aaPredicted RBP8.72□□□□□ -1.01
USP4-211ENST00000485450 GTF2A2P52657 109 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 CORO7P57737 925 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 EVX2Q03828 476 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 CCDC144BQ3MJ40 725 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 CWC27Q6UX04 472 aaKnown RBP8.72□□□□□ -1.01
USP4-211ENST00000485450 LUZP1Q86V48 1076 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 CCDC144CPQ8IYA2 1237 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 MB21D2Q8IYB1 491 aaPredicted RBP8.72□□□□□ -1.01
USP4-211ENST00000485450 PTPN18Q99952 460 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 FSD1Q9BTV5 496 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 TM6SF1Q9BZW5 370 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 TRIM5Q9C035 493 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 U3KPZ7 1027 aaPredicted RBP8.72□□□□□ -1.01
USP4-211ENST00000485450 F8W031 263 aaPredicted RBP8.72□□□□□ -1.01
USP4-211ENST00000485450 PPP1R12BO60237 982 aaPredicted RBP8.72□□□□□ -1.01
USP4-211ENST00000485450 SMARCA1P28370 1054 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 NF2P35240 595 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 EXOSC10Q01780 885 aaKnown RBP8.72□□□□□ -1.01
USP4-211ENST00000485450 NKX2-3Q8TAU0 364 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 AIDAQ96BJ3 306 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 IL17RBQ9NRM6 502 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 ETAA1Q9NY74 926 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 CLIP2Q9UDT6 1046 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 SLC4A4Q9Y6R1 1079 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 RTN2O75298 545 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 RPS6KA5O75582 802 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 ASNSP08243 561 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 TYRO3Q06418 890 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 IRF5Q13568 498 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 DEFB115Q30KQ5 88 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 ARHGAP29Q52LW3 1261 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 CCAR2Q8N163 923 aaKnown RBP8.72□□□□□ -1.01
USP4-211ENST00000485450 RUFY2Q8WXA3 655 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 CBX8Q9HC52 389 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 SLC24A3Q9HC58 644 aa8.72□□□□□ -1.01
USP4-211ENST00000485450 SASH3O75995 380 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 ADCY2Q08462 1091 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 CCDC178Q5BJE1 867 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 CPLX2Q6PUV4 134 aaKnown RBP8.71□□□□□ -1.01
USP4-211ENST00000485450 LRRC31Q6UY01 552 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 DLK2Q6UY11 383 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 IFNL1Q8IU54 200 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 TBC1D10CQ8IV04 446 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 ZNF483Q8TF39 744 aaPredicted RBP8.71□□□□□ -1.01
USP4-211ENST00000485450 LPAR1Q92633 364 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 ZNF232Q9UNY5 417 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 AGTPBP1Q9UPW5 1226 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 ATP6V1DQ9Y5K8 247 aa8.71□□□□□ -1.01
USP4-211ENST00000485450 CNMDO75829 334 aa8.71□□□□□ -1.02
USP4-211ENST00000485450 HLA-DOAP06340 250 aa8.71□□□□□ -1.02
USP4-211ENST00000485450 BCRP11274 1271 aa8.71□□□□□ -1.02
USP4-211ENST00000485450 CCNHP51946 323 aaPredicted RBP8.71□□□□□ -1.02
USP4-211ENST00000485450 TSHZ1Q6ZSZ6 1077 aa8.71□□□□□ -1.02
USP4-211ENST00000485450 SDR42E1Q8WUS8 393 aa8.71□□□□□ -1.02
USP4-211ENST00000485450 USP6NLQ92738 828 aa8.71□□□□□ -1.02
USP4-211ENST00000485450 ORC3Q9UBD5 711 aaPredicted RBP8.71□□□□□ -1.02
USP4-211ENST00000485450 ALDH1A1P00352 501 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms