RNA–Protein interactions for RNA: ENST00000475993.1

ABCF1-205, Transcript of ATP binding cassette subfamily F member 1, human

TSL 1 (best)

Gene ABCF1, Length 2,860 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCF1-205	ENST00000475993	TCP11X2	Q5H9J9	407 aa		11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	TTLL7	Q6ZT98	887 aa		11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	SPATA21	Q7Z572	469 aa		11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	RIC3	Q7Z5B4	369 aa		11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	ARHGEF1	Q92888	912 aa	Known RBP	11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	HOOK2	Q96ED9	719 aa		11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	LTV1	Q96GA3	475 aa	Predicted RBP	11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	PAGE5	Q96GU1	130 aa		11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	CSRNP2	Q9H175	543 aa		11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	BATF3	Q9NR55	127 aa		11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	TBC1D2B	Q9UPU7	963 aa		11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	CTNND2	Q9UQB3	1225 aa		11.74	□□□□□ -0.53
ABCF1-205	ENST00000475993	BTBD18	B2RXH4	712 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993		E7EVH7	732 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	IARS	P41252	1262 aa	Known RBP	11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	AFM	P43652	599 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	HDGF	P51858	240 aa	Known RBP	11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	NEXN	Q0ZGT2	675 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	ITGB3BP	Q13352	177 aa	Predicted RBP	11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	LACTB2	Q53H82	288 aa	Predicted RBP	11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	APOA5	Q6Q788	366 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	STRN4	Q9NRL3	753 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	LUC7L2	Q9Y383	392 aa	Known RBP	11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	IMPDH2	P12268	514 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	RXRA	P19793	462 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	CASP1	P29466	404 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	PPARA	Q07869	468 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	GLE1	Q53GS7	698 aa	Known RBP	11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	CFAP58	Q5T655	872 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	MREG	Q8N565	214 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	RASSF8	Q8NHQ8	419 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	ATP6V1G3	Q96LB4	118 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	YIPF2	Q9BWQ6	316 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	HOMER3	Q9NSC5	361 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	CAPN11	Q9UMQ6	739 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	PCDHB6	Q9Y5E3	794 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	STK36	Q9NRP7	1315 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	HMGB1P1	B2RPK0	211 aa	Predicted RBP	11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	KCNJ18	B7U540	433 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	KIF4A	O95239	1232 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	MMP1	P03956	469 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	PAX3	P23760	479 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	UBXN1	Q04323	297 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	KCNJ12	Q14500	433 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	CCDC43	Q96MW1	224 aa	Known RBP	11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	PLEKHG4B	Q96PX9	1271 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	ZCWPW1	Q9H0M4	648 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	RWDD2A	Q9UIY3	292 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	DUSP10	Q9Y6W6	482 aa		11.73	□□□□□ -0.53
ABCF1-205	ENST00000475993	UBE2Q2L	H0YL09	131 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	SCTR	P47872	440 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	MRPS25	P82663	173 aa	Known RBP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	TMEM132A	Q24JP5	1023 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	AMOT	Q4VCS5	1084 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	AKAP4	Q5JQC9	854 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	TSPAN18	Q96SJ8	248 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	EPAS1	Q99814	870 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	GPR108	Q9NPR9	543 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	ZSCAN9	O15535	394 aa	Predicted RBP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	COBL	O75128	1261 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	CDC25C	P30307	473 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	CYLC1	P35663	651 aa	Predicted RBP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	PIP4K2A	P48426	406 aa	Predicted RBP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	VAV2	P52735	878 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	WASHC4	Q2M389	1173 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	DIS3L2	Q8IYB7	885 aa	Known RBP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	NEUROD6	Q96NK8	337 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	METTL22	Q9BUU2	404 aa	Predicted RBP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	FOXP1	Q9H334	677 aa	Predicted RBP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	ESF1	Q9H501	851 aa	Known RBP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	EBF2	Q9HAK2	575 aa		11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	11.72	□□□□□ -0.53
ABCF1-205	ENST00000475993		A0A1W2PQC6	194 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	ZNF213	O14771	459 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	OPLAH	O14841	1288 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	DNAJC8	O75937	253 aa	Predicted RBP	11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	FMNL1	O95466	1100 aa	Predicted RBP	11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	ZRSR2	Q15696	482 aa	Known RBP	11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	TSR1	Q2NL82	804 aa	Known RBP	11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	ACCSL	Q4AC99	568 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	SLC30A9	Q6PML9	568 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	MPRIP	Q6WCQ1	1025 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	CCDC170	Q8IYT3	715 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	TRIM58	Q8NG06	486 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	P3H4	Q92791	437 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	SLC39A2	Q9NP94	309 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	CEP131	Q9UPN4	1083 aa		11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	PARP4	Q9UKK3	1724 aa	Known RBP	11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	MARF1	Q9Y4F3	1742 aa	Known RBP	11.71	□□□□□ -0.53
ABCF1-205	ENST00000475993	RBM47	A0AV96	593 aa	Known RBP	11.71	□□□□□ -0.54
ABCF1-205	ENST00000475993	MACROD2	A1Z1Q3	448 aa		11.71	□□□□□ -0.54
ABCF1-205	ENST00000475993	GMNC	A6NCL1	334 aa		11.71	□□□□□ -0.54
ABCF1-205	ENST00000475993	C5orf60	A6NFR6	353 aa		11.71	□□□□□ -0.54
ABCF1-205	ENST00000475993	IFIT1	P09914	478 aa	Known RBP	11.71	□□□□□ -0.54
ABCF1-205	ENST00000475993	NLRP6	P59044	892 aa		11.71	□□□□□ -0.54
ABCF1-205	ENST00000475993	PDIA5	Q14554	519 aa		11.71	□□□□□ -0.54

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