RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 MUM1L1Q5H9M0 696 aa22.43■■□□□ 1.18
SF3A1-202ENST00000411423 CYB5R4Q7L1T6 521 aa22.43■■□□□ 1.18
SF3A1-202ENST00000411423 CENPQQ7L2Z9 268 aaPredicted RBP22.43■■□□□ 1.18
SF3A1-202ENST00000411423 CHST13Q8NET6 341 aa22.43■■□□□ 1.18
SF3A1-202ENST00000411423 RANBP17Q9H2T7 1088 aaKnown RBP22.43■■□□□ 1.18
SF3A1-202ENST00000411423 DNAH12Q6ZR08 3092 aa22.43■■□□□ 1.18
SF3A1-202ENST00000411423 SEPT4O43236 478 aa22.42■■□□□ 1.18
SF3A1-202ENST00000411423 SNAI1O95863 264 aaPredicted RBP22.42■■□□□ 1.18
SF3A1-202ENST00000411423 ZNF865P0CJ78 1059 aaPredicted RBP22.42■■□□□ 1.18
SF3A1-202ENST00000411423 ZNF543Q08ER8 600 aa22.42■■□□□ 1.18
SF3A1-202ENST00000411423 SYDE2Q5VT97 1194 aa22.42■■□□□ 1.18
SF3A1-202ENST00000411423 DGKHQ86XP1 1220 aa22.42■■□□□ 1.18
SF3A1-202ENST00000411423 ENAHQ8N8S7 591 aaPredicted RBP22.42■■□□□ 1.18
SF3A1-202ENST00000411423 ANKS1AQ92625 1134 aa22.42■■□□□ 1.18
SF3A1-202ENST00000411423 DDX11Q96FC9 970 aa22.42■■□□□ 1.18
SF3A1-202ENST00000411423 ZSCAN10Q96SZ4 725 aaPredicted RBP22.42■■□□□ 1.18
SF3A1-202ENST00000411423 CPVLQ9H3G5 476 aa22.42■■□□□ 1.18
SF3A1-202ENST00000411423 RNF146Q9NTX7 359 aa22.42■■□□□ 1.18
SF3A1-202ENST00000411423 GOLGA8HP0CJ92 632 aa22.41■■□□□ 1.18
SF3A1-202ENST00000411423 ALAS1P13196 640 aa22.41■■□□□ 1.18
SF3A1-202ENST00000411423 CNTN2Q02246 1040 aa22.41■■□□□ 1.18
SF3A1-202ENST00000411423 STOX1Q6ZVD7 989 aa22.41■■□□□ 1.18
SF3A1-202ENST00000411423 RUFY2Q8WXA3 655 aa22.41■■□□□ 1.18
SF3A1-202ENST00000411423 A1CFQ9NQ94 594 aaKnown RBP22.41■■□□□ 1.18
SF3A1-202ENST00000411423 ASTN1O14525 1302 aa22.4■■□□□ 1.18
SF3A1-202ENST00000411423 TNKSO95271 1327 aa22.4■■□□□ 1.18
SF3A1-202ENST00000411423 LCTP09848 1927 aa22.4■■□□□ 1.18
SF3A1-202ENST00000411423 ANKRD35Q8N283 1001 aa22.4■■□□□ 1.18
SF3A1-202ENST00000411423 LENG1Q96BZ8 264 aaPredicted RBP22.4■■□□□ 1.18
SF3A1-202ENST00000411423 TRERF1Q96PN7 1200 aa22.4■■□□□ 1.18
SF3A1-202ENST00000411423 ACAD9Q9H845 621 aa22.4■■□□□ 1.18
SF3A1-202ENST00000411423 FBXO40Q9UH90 709 aa22.4■■□□□ 1.18
SF3A1-202ENST00000411423 DDX49Q9Y6V7 483 aaKnown RBP22.4■■□□□ 1.18
SF3A1-202ENST00000411423 MSCO60682 206 aa22.39■■□□□ 1.17
SF3A1-202ENST00000411423 SEC23AQ15436 765 aa22.39■■□□□ 1.17
SF3A1-202ENST00000411423 GJC2Q5T442 439 aaPredicted RBP22.39■■□□□ 1.17
SF3A1-202ENST00000411423 MAMDC4Q6UXC1 1216 aa22.39■■□□□ 1.17
SF3A1-202ENST00000411423 IQCA1Q86XH1 822 aa22.39■■□□□ 1.17
SF3A1-202ENST00000411423 PNMA1Q8ND90 353 aa22.39■■□□□ 1.17
SF3A1-202ENST00000411423 PURBQ96QR8 312 aaKnown RBP22.39■■□□□ 1.17
SF3A1-202ENST00000411423 KRT23Q9C075 422 aa22.39■■□□□ 1.17
SF3A1-202ENST00000411423 COLQQ9Y215 455 aaPredicted RBP22.39■■□□□ 1.17
SF3A1-202ENST00000411423 SOWAHBA6NEL2 793 aa22.38■■□□□ 1.17
SF3A1-202ENST00000411423 EVI5O60447 810 aa22.38■■□□□ 1.17
SF3A1-202ENST00000411423 ICAM1P05362 532 aa22.38■■□□□ 1.17
SF3A1-202ENST00000411423 COL9A3Q14050 684 aaPredicted RBP22.38■■□□□ 1.17
SF3A1-202ENST00000411423 LRRC26Q2I0M4 334 aa22.38■■□□□ 1.17
SF3A1-202ENST00000411423 C7orf61Q8IZ16 206 aa22.38■■□□□ 1.17
SF3A1-202ENST00000411423 FAM133AQ8N9E0 248 aa22.38■■□□□ 1.17
SF3A1-202ENST00000411423 MAP4K1Q92918 833 aa22.38■■□□□ 1.17
SF3A1-202ENST00000411423 UBA5Q9GZZ9 404 aa22.38■■□□□ 1.17
SF3A1-202ENST00000411423 CCPG1Q9ULG6 757 aa22.38■■□□□ 1.17
SF3A1-202ENST00000411423 U3KPZ7 1027 aaPredicted RBP22.38■■□□□ 1.17
SF3A1-202ENST00000411423 ADCY6O43306 1168 aa22.37■■□□□ 1.17
SF3A1-202ENST00000411423 NT5C2P49902 561 aa22.37■■□□□ 1.17
SF3A1-202ENST00000411423 TKFCQ3LXA3 575 aa22.37■■□□□ 1.17
SF3A1-202ENST00000411423 ZNF467Q7Z7K2 595 aaPredicted RBP22.37■■□□□ 1.17
SF3A1-202ENST00000411423 LSG1Q9H089 658 aaKnown RBP22.37■■□□□ 1.17
SF3A1-202ENST00000411423 CNNM2Q9H8M5 875 aa22.37■■□□□ 1.17
SF3A1-202ENST00000411423 SENP2Q9HC62 589 aa22.37■■□□□ 1.17
SF3A1-202ENST00000411423 NRBP1Q9UHY1 535 aa22.37■■□□□ 1.17
SF3A1-202ENST00000411423 MCM3APO60318 1980 aa22.37■■□□□ 1.17
SF3A1-202ENST00000411423 SYNGAP1Q96PV0 1343 aa22.36■■□□□ 1.17
SF3A1-202ENST00000411423 E7EWF7 191 aa22.36■■□□□ 1.17
SF3A1-202ENST00000411423 DNM1LO00429 736 aa22.36■■□□□ 1.17
SF3A1-202ENST00000411423 MSL3Q8N5Y2 521 aaKnown RBP22.36■■□□□ 1.17
SF3A1-202ENST00000411423 ESYT1Q9BSJ8 1104 aa22.36■■□□□ 1.17
SF3A1-202ENST00000411423 KATNBL1Q9H079 304 aa22.36■■□□□ 1.17
SF3A1-202ENST00000411423 KAT14Q9H8E8 782 aa22.36■■□□□ 1.17
SF3A1-202ENST00000411423 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.36■■□□□ 1.17
SF3A1-202ENST00000411423 CYP39A1Q9NYL5 469 aa22.36■■□□□ 1.17
SF3A1-202ENST00000411423 RBM8AQ9Y5S9 174 aaKnown RBP22.36■■□□□ 1.17
SF3A1-202ENST00000411423 NFIBO00712 420 aa22.35■■□□□ 1.17
SF3A1-202ENST00000411423 IRX5P78411 483 aaPredicted RBP22.35■■□□□ 1.17
SF3A1-202ENST00000411423 LRRC41Q15345 812 aa22.35■■□□□ 1.17
SF3A1-202ENST00000411423 HABP4Q5JVS0 413 aaKnown RBP22.35■■□□□ 1.17
SF3A1-202ENST00000411423 CHRDL2Q6WN34 429 aa22.35■■□□□ 1.17
SF3A1-202ENST00000411423 ARMCX2Q7L311 632 aa22.35■■□□□ 1.17
SF3A1-202ENST00000411423 CCDC144CPQ8IYA2 1237 aa22.35■■□□□ 1.17
SF3A1-202ENST00000411423 CLEC4DQ8WXI8 215 aa22.35■■□□□ 1.17
SF3A1-202ENST00000411423 SENP6Q9GZR1 1112 aaPredicted RBP22.35■■□□□ 1.17
SF3A1-202ENST00000411423 PRO3102Q9H379 93 aa22.35■■□□□ 1.17
SF3A1-202ENST00000411423 LRRC37A2A6NM11 1700 aa22.34■■□□□ 1.17
SF3A1-202ENST00000411423 RANBP2P49792 3224 aaKnown RBP22.34■■□□□ 1.17
SF3A1-202ENST00000411423 POTEB2H3BUK9 544 aa22.34■■□□□ 1.17
SF3A1-202ENST00000411423 PGK1P00558 417 aa22.34■■□□□ 1.17
SF3A1-202ENST00000411423 ANTXR2P58335 489 aa22.34■■□□□ 1.17
SF3A1-202ENST00000411423 CCDC178Q5BJE1 867 aa22.34■■□□□ 1.17
SF3A1-202ENST00000411423 BMP2KLQ5H9B9 411 aa22.34■■□□□ 1.17
SF3A1-202ENST00000411423 CHST3Q7LGC8 479 aa22.34■■□□□ 1.17
SF3A1-202ENST00000411423 UBAC1Q9BSL1 405 aa22.34■■□□□ 1.17
SF3A1-202ENST00000411423 ZHX1Q9UKY1 873 aaPredicted RBP22.34■■□□□ 1.17
SF3A1-202ENST00000411423 ZMYND8Q9ULU4 1186 aaPredicted RBP22.34■■□□□ 1.17
SF3A1-202ENST00000411423 NR2E3Q9Y5X4 410 aa22.34■■□□□ 1.17
SF3A1-202ENST00000411423 ACVR2BQ13705 512 aa22.33■■□□□ 1.17
SF3A1-202ENST00000411423 GPATCH4Q5T3I0 446 aaKnown RBP22.33■■□□□ 1.17
SF3A1-202ENST00000411423 NSMFQ6X4W1 530 aa22.33■■□□□ 1.17
SF3A1-202ENST00000411423 STAG2Q8N3U4 1231 aa22.33■■□□□ 1.17
SF3A1-202ENST00000411423 XPNPEP3Q9NQH7 507 aa22.33■■□□□ 1.17
SF3A1-202ENST00000411423 CNPY2Q9Y2B0 182 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms