RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 CNTNAP1P78357 1384 aa21.51■■□□□ 1.03
CCDC50-202ENST00000392456 CNTNAP5Q8WYK1 1306 aa21.5■■□□□ 1.03
CCDC50-202ENST00000392456 DEXIO95424 95 aa21.5■■□□□ 1.03
CCDC50-202ENST00000392456 OAS2P29728 719 aaKnown RBP21.5■■□□□ 1.03
CCDC50-202ENST00000392456 GMPSP49915 693 aaPredicted RBP21.5■■□□□ 1.03
CCDC50-202ENST00000392456 TNIP1Q15025 636 aa21.5■■□□□ 1.03
CCDC50-202ENST00000392456 LRRC47Q8N1G4 583 aaKnown RBP21.5■■□□□ 1.03
CCDC50-202ENST00000392456 USP28Q96RU2 1077 aa21.5■■□□□ 1.03
CCDC50-202ENST00000392456 CSRNP1Q96S65 589 aa21.5■■□□□ 1.03
CCDC50-202ENST00000392456 SYT17Q9BSW7 474 aa21.5■■□□□ 1.03
CCDC50-202ENST00000392456 RNF26Q9BY78 433 aaPredicted RBP21.5■■□□□ 1.03
CCDC50-202ENST00000392456 TMEM39BQ9GZU3 492 aa21.5■■□□□ 1.03
CCDC50-202ENST00000392456 USP17L2Q6R6M4 530 aa21.5■■□□□ 1.03
CCDC50-202ENST00000392456 SAMD7Q7Z3H4 446 aa21.5■■□□□ 1.03
CCDC50-202ENST00000392456 ZCCHC17Q9NP64 241 aaKnown RBP21.5■■□□□ 1.03
CCDC50-202ENST00000392456 ASTN2O75129 1339 aaPredicted RBP21.49■■□□□ 1.03
CCDC50-202ENST00000392456 GRM4Q14833 912 aa21.49■■□□□ 1.03
CCDC50-202ENST00000392456 CCDC178Q5BJE1 867 aa21.49■■□□□ 1.03
CCDC50-202ENST00000392456 MTMR14Q8NCE2 650 aa21.49■■□□□ 1.03
CCDC50-202ENST00000392456 LEO1Q8WVC0 666 aaPredicted RBP21.49■■□□□ 1.03
CCDC50-202ENST00000392456 VPS54Q9P1Q0 977 aa21.49■■□□□ 1.03
CCDC50-202ENST00000392456 CLIP2Q9UDT6 1046 aa21.49■■□□□ 1.03
CCDC50-202ENST00000392456 PRPF3O43395 683 aaKnown RBP21.49■■□□□ 1.03
CCDC50-202ENST00000392456 CYTH3O43739 400 aa21.49■■□□□ 1.03
CCDC50-202ENST00000392456 GDF11O95390 407 aa21.49■■□□□ 1.03
CCDC50-202ENST00000392456 NYAP1Q6ZVC0 841 aa21.49■■□□□ 1.03
CCDC50-202ENST00000392456 ATRNL1Q5VV63 1379 aa21.49■■□□□ 1.03
CCDC50-202ENST00000392456 PLIN4Q96Q06 1357 aa21.49■■□□□ 1.03
CCDC50-202ENST00000392456 ARFGEF1Q9Y6D6 1849 aa21.48■■□□□ 1.03
CCDC50-202ENST00000392456 ATP8B1O43520 1251 aa21.48■■□□□ 1.03
CCDC50-202ENST00000392456 TOP1P11387 765 aaKnown RBP21.48■■□□□ 1.03
CCDC50-202ENST00000392456 SETQ01105 290 aaPredicted RBP21.48■■□□□ 1.03
CCDC50-202ENST00000392456 ERCC6LQ2NKX8 1250 aa21.48■■□□□ 1.03
CCDC50-202ENST00000392456 TATDN1Q6P1N9 297 aa21.48■■□□□ 1.03
CCDC50-202ENST00000392456 USP17L5A8MUK1 530 aa21.48■■□□□ 1.03
CCDC50-202ENST00000392456 BTBD18B2RXH4 712 aa21.48■■□□□ 1.03
CCDC50-202ENST00000392456 CERKLQ49MI3 558 aaPredicted RBP21.48■■□□□ 1.03
CCDC50-202ENST00000392456 FOXP4Q8IVH2 680 aaPredicted RBP21.48■■□□□ 1.03
CCDC50-202ENST00000392456 SPATA32Q96LK8 384 aa21.48■■□□□ 1.03
CCDC50-202ENST00000392456 TMOD2Q9NZR1 351 aa21.48■■□□□ 1.03
CCDC50-202ENST00000392456 PALM3A6NDB9 673 aaPredicted RBP21.47■■□□□ 1.03
CCDC50-202ENST00000392456 METTL16Q86W50 562 aaKnown RBP21.47■■□□□ 1.03
CCDC50-202ENST00000392456 MICALL2Q8IY33 904 aa21.47■■□□□ 1.03
CCDC50-202ENST00000392456 OXER1Q8TDS5 423 aa21.47■■□□□ 1.03
CCDC50-202ENST00000392456 KIF2AO00139 706 aaPredicted RBP21.47■■□□□ 1.03
CCDC50-202ENST00000392456 KIF5BP33176 963 aa21.47■■□□□ 1.03
CCDC50-202ENST00000392456 ZNF280AP59817 542 aaPredicted RBP21.47■■□□□ 1.03
CCDC50-202ENST00000392456 ATP2B2Q01814 1243 aa21.47■■□□□ 1.03
CCDC50-202ENST00000392456 FAM151AQ8WW52 585 aa21.47■■□□□ 1.03
CCDC50-202ENST00000392456 MYH8P13535 1937 aa21.47■■□□□ 1.03
CCDC50-202ENST00000392456 H0YHG0 523 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 MMP1P03956 469 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 LMAN1P49257 510 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 SARNPP82979 210 aaKnown RBP21.46■■□□□ 1.03
CCDC50-202ENST00000392456 AKAP17AQ02040 695 aaKnown RBP21.46■■□□□ 1.03
CCDC50-202ENST00000392456 NR5A1Q13285 461 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 TRIM29Q14134 588 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 TBC1D10BQ4KMP7 808 aaPredicted RBP21.46■■□□□ 1.03
CCDC50-202ENST00000392456 TMCO3Q6UWJ1 677 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 SIAH1Q8IUQ4 282 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 WASF1Q92558 559 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 CNOT7Q9UIV1 285 aaKnown RBP21.46■■□□□ 1.03
CCDC50-202ENST00000392456 ADAMTS3O15072 1205 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 LIG1P18858 919 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 SCP2P22307 547 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 UBE2HP62256 183 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 ZC3H12AQ5D1E8 599 aaKnown RBP21.46■■□□□ 1.03
CCDC50-202ENST00000392456 MYSM1Q5VVJ2 828 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 PGBD1Q96JS3 809 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 MAP3K14Q99558 947 aa21.46■■□□□ 1.03
CCDC50-202ENST00000392456 RPS6KA5O75582 802 aa21.45■■□□□ 1.02
CCDC50-202ENST00000392456 YBX3P16989 372 aaKnown RBP eCLIP21.45■■□□□ 1.024e-7■□□□□ 10.3
CCDC50-202ENST00000392456 SEPT2Q15019 361 aa21.45■■□□□ 1.02
CCDC50-202ENST00000392456 SCAND2PQ9GZW5 306 aaPredicted RBP21.45■■□□□ 1.02
CCDC50-202ENST00000392456 CLIC4Q9Y696 253 aa21.45■■□□□ 1.02
CCDC50-202ENST00000392456 KLRF2D3W0D1 207 aa21.45■■□□□ 1.02
CCDC50-202ENST00000392456 TTLL1O95922 423 aa21.45■■□□□ 1.02
CCDC50-202ENST00000392456 PTPN14Q15678 1187 aa21.45■■□□□ 1.02
CCDC50-202ENST00000392456 MIGA2Q7L4E1 593 aa21.45■■□□□ 1.02
CCDC50-202ENST00000392456 DIS3L2Q8IYB7 885 aaKnown RBP21.45■■□□□ 1.02
CCDC50-202ENST00000392456 FAXDC2Q96IV6 333 aa21.45■■□□□ 1.02
CCDC50-202ENST00000392456 FRMPD2Q68DX3 1309 aaPredicted RBP21.44■■□□□ 1.02
CCDC50-202ENST00000392456 MYH6P13533 1939 aa21.44■■□□□ 1.02
CCDC50-202ENST00000392456 PDHBP11177 359 aa21.44■■□□□ 1.02
CCDC50-202ENST00000392456 CCDC17Q96LX7 622 aa21.44■■□□□ 1.02
CCDC50-202ENST00000392456 UBA5Q9GZZ9 404 aa21.44■■□□□ 1.02
CCDC50-202ENST00000392456 PGAP2Q9UHJ9 254 aa21.44■■□□□ 1.02
CCDC50-202ENST00000392456 ANKRD33BA6NCL7 494 aa21.44■■□□□ 1.02
CCDC50-202ENST00000392456 ADAM21Q9UKJ8 722 aa21.44■■□□□ 1.02
CCDC50-202ENST00000392456 RPS12P25398 132 aaKnown RBP21.43■■□□□ 1.02
CCDC50-202ENST00000392456 NPY5RQ15761 445 aa21.43■■□□□ 1.02
CCDC50-202ENST00000392456 LEKR1Q6ZMV7 388 aa21.43■■□□□ 1.02
CCDC50-202ENST00000392456 GPKOWQ92917 476 aaPredicted RBP eCLIP21.43■■□□□ 1.02
CCDC50-202ENST00000392456 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.43■■□□□ 1.02
CCDC50-202ENST00000392456 NRBP1Q9UHY1 535 aa21.43■■□□□ 1.02
CCDC50-202ENST00000392456 CFAP45Q9UL16 551 aa21.43■■□□□ 1.02
CCDC50-202ENST00000392456 SMC2O95347 1197 aa21.43■■□□□ 1.02
CCDC50-202ENST00000392456 GH2P01242 217 aa21.43■■□□□ 1.02
CCDC50-202ENST00000392456 PARP1P09874 1014 aaKnown RBP21.43■■□□□ 1.02
CCDC50-202ENST00000392456 EEF2P13639 858 aaKnown RBP21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms