RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PIK3AP1Q6ZUJ8 805 aa20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 FAM160B2Q86V87 743 aa20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 REXO1Q8N1G1 1221 aaKnown RBP20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 DCPSQ96C86 337 aaKnown RBP20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 AS3MTQ9HBK9 375 aa20.76■□□□□ 0.91
CCDC88C-203ENST00000389856 DOCK1Q14185 1865 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 PLA2G6O60733 806 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 PTMAP06454 111 aaKnown RBP20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 STAT2P52630 851 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 NBPF12Q5TAG4 269 aaPredicted RBP20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 LPAR1Q92633 364 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 L3MBTL3Q96JM7 780 aaPredicted RBP20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 PICK1Q9NRD5 415 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 A0A1W2PRG0 241 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 USP17L10C9JJH3 530 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 TMEM232C9JQI7 657 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 TYRO3Q06418 890 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 ORC2Q13416 577 aaPredicted RBP20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 CUL5Q93034 780 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 FERMT2Q96AC1 680 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 PCDHA6Q9UN73 950 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 PCDHA8Q9Y5H6 950 aa20.75■□□□□ 0.91
CCDC88C-203ENST00000389856 VEGFAP15692 232 aaPredicted RBP20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 ATP2B1P20020 1258 aa20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 SLC16A2P36021 539 aa20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 USP14P54578 494 aa20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 NONOQ15233 471 aaKnown RBP eCLIP20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 CDC37Q16543 378 aaPredicted RBP20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 TYW1BQ6NUM6 668 aa20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 USP50Q70EL3 339 aaPredicted RBP20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 SULF1Q8IWU6 871 aa20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 ZNF579Q8NAF0 562 aaKnown RBP20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 AMNQ9BXJ7 453 aa20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 USP25Q9UHP3 1055 aa20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 ZNF112Q9UJU3 913 aa20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 FEM1BQ9UK73 627 aa20.74■□□□□ 0.91
CCDC88C-203ENST00000389856 M0R2N6 131 aa20.73■□□□□ 0.91
CCDC88C-203ENST00000389856 MARCKSP29966 332 aaPredicted RBP20.73■□□□□ 0.91
CCDC88C-203ENST00000389856 ECE1P42892 770 aa20.73■□□□□ 0.91
CCDC88C-203ENST00000389856 SCYL3Q8IZE3 742 aa20.73■□□□□ 0.91
CCDC88C-203ENST00000389856 ACER1Q8TDN7 264 aa20.73■□□□□ 0.91
CCDC88C-203ENST00000389856 RIC8AQ9NPQ8 531 aa20.73■□□□□ 0.91
CCDC88C-203ENST00000389856 FAM13BQ9NYF5 915 aa20.73■□□□□ 0.91
CCDC88C-203ENST00000389856 PCDHB6Q9Y5E3 794 aa20.73■□□□□ 0.91
CCDC88C-203ENST00000389856 OFD1O75665 1012 aa20.72■□□□□ 0.91
CCDC88C-203ENST00000389856 ADCY5O95622 1261 aa20.72■□□□□ 0.91
CCDC88C-203ENST00000389856 HIRAP54198 1017 aaPredicted RBP20.72■□□□□ 0.91
CCDC88C-203ENST00000389856 TERF1P54274 439 aa20.72■□□□□ 0.91
CCDC88C-203ENST00000389856 QRICH1Q2TAL8 776 aa20.72■□□□□ 0.91
CCDC88C-203ENST00000389856 SASS6Q6UVJ0 657 aa20.72■□□□□ 0.91
CCDC88C-203ENST00000389856 ZC3H15Q8WU90 426 aaKnown RBP20.72■□□□□ 0.91
CCDC88C-203ENST00000389856 KIAA1683Q9H0B3 1180 aa20.72■□□□□ 0.91
CCDC88C-203ENST00000389856 SRPRBQ9Y5M8 271 aaKnown RBP20.72■□□□□ 0.91
CCDC88C-203ENST00000389856 IQCA1LA6NCM1 817 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 LAD1O00515 517 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 PTPREP23469 700 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 AXDND1Q5T1B0 1012 aaPredicted RBP20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 FBXO11Q86XK2 927 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 WRNIP1Q96S55 665 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 PCDHA1Q9Y5I3 950 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 WDR46O15213 610 aaKnown RBP20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 NR1I2O75469 434 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 FAM83BQ5T0W9 1011 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 SPICE1Q8N0Z3 855 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 COA7Q96BR5 231 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 CCDC34Q96HJ3 373 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 NUP88Q99567 741 aaPredicted RBP20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 NAP1L4Q99733 375 aaKnown RBP20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 WDR18Q9BV38 432 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 PNMA2Q9UL42 364 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 SCAF8Q9UPN6 1271 aaKnown RBP20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 MRVI1Q9Y6F6 885 aa20.71■□□□□ 0.91
CCDC88C-203ENST00000389856 SCN4AP35499 1836 aa20.7■□□□□ 0.9
CCDC88C-203ENST00000389856 GOLGA6L6A8MZA4 724 aa20.7■□□□□ 0.9
CCDC88C-203ENST00000389856 EARS2Q5JPH6 523 aaKnown RBP20.7■□□□□ 0.9
CCDC88C-203ENST00000389856 RESP18Q5W5W9 173 aa20.7■□□□□ 0.9
CCDC88C-203ENST00000389856 ARL6IP4Q66PJ3 421 aaKnown RBP20.7■□□□□ 0.9
CCDC88C-203ENST00000389856 PSTPIP2Q9H939 334 aa20.7■□□□□ 0.9
CCDC88C-203ENST00000389856 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.7■□□□□ 0.9
CCDC88C-203ENST00000389856 FBXO2Q9UK22 296 aaPredicted RBP20.7■□□□□ 0.9
CCDC88C-203ENST00000389856 PRR12Q9ULL5 1215 aa20.7■□□□□ 0.9
CCDC88C-203ENST00000389856 FAM237AA0A1B0GTK4 181 aa20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 FAM205CA6NFA0 338 aa20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 GLTPD2A6NH11 291 aa20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 NF2P35240 595 aa20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 ATP2C1P98194 919 aaPredicted RBP20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 NOL9Q5SY16 702 aaKnown RBP20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 NEK8Q86SG6 692 aa20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 ENGASEQ8NFI3 743 aa20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 TIGD1Q96MW7 591 aa20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 PYM1Q9BRP8 204 aaKnown RBP20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 HOOK1Q9UJC3 728 aaKnown RBP20.69■□□□□ 0.9
CCDC88C-203ENST00000389856 PPP1R12BO60237 982 aaPredicted RBP20.68■□□□□ 0.9
CCDC88C-203ENST00000389856 ZNF174Q15697 407 aa20.68■□□□□ 0.9
CCDC88C-203ENST00000389856 FMR1NBQ8N0W7 255 aaPredicted RBP20.68■□□□□ 0.9
CCDC88C-203ENST00000389856 GOLPH3LQ9H4A5 285 aa20.68■□□□□ 0.9
CCDC88C-203ENST00000389856 A0A1B0GVL5 298 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 PFKFB1P16118 471 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 INPP5BP32019 993 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms