RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 DAB2IPQ5VWQ8 1189 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 C16orf59Q7L2K0 433 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 GRAPLQ8TC17 118 aaPredicted RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 CTNNBL1Q8WYA6 563 aaPredicted RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 PUS7Q96PZ0 661 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 GCOM2Q9BZD3 368 aaPredicted RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 TRPV6Q9H1D0 765 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 BRD9Q9H8M2 597 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 C14orf93Q9H972 538 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 GGA3Q9NZ52 723 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 SUGT1Q9Y2Z0 365 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 USP31Q70CQ4 1352 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 ATG13O75143 517 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 IFNA8P32881 189 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 GTF2H3Q13889 308 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 SEPT6Q14141 434 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 KYAT1Q16773 422 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 GLIPR1L2Q4G1C9 344 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 KSR2Q6VAB6 950 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 DHX32Q7L7V1 743 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 HEATR3Q7Z4Q2 680 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 SPATA2LQ8IUW3 424 aaPredicted RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 ZNF248Q8NDW4 579 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 C1QTNF7Q9BXJ2 289 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 ZNF212Q9UDV6 495 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 MYPNQ86TC9 1320 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 CPB1P15086 417 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 PSMA3P25788 255 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 CRKLP46109 303 aaKnown RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 ATN1P54259 1190 aaPredicted RBP4.54□□□□□ -1.68
USH2A-202ENST00000366942 IGBP1P78318 339 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 TBC1D8BQ0IIM8 1120 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 C4orf50Q6ZRC1 276 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 BARGINQ6ZT62 677 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 GPC2Q8N158 579 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 ACRBPQ8NEB7 543 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 LPIN2Q92539 896 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 SIN3AQ96ST3 1273 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 DNAJC7Q99615 494 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 GBP3Q9H0R5 595 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 ABI3Q9P2A4 366 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 NR2E1Q9Y466 385 aa4.54□□□□□ -1.68
USH2A-202ENST00000366942 HECW1Q76N89 1606 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 NPATQ14207 1427 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 CASKIN1Q8WXD9 1431 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 CFAP43Q8NDM7 1665 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 A0A0G2JLW4 131 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 GOLGA6L10A6NI86 522 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 WDR46O15213 610 aaKnown RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 PPP1R2P41236 205 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 ZNF75DP51815 510 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 EPHB1P54762 984 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 MYO1EQ12965 1108 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 BTG3Q14201 252 aaPredicted RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 STXBP2Q15833 593 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 SYCP2LQ5T4T6 812 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 FAM117BQ6P1L5 589 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 MIER3Q7Z3K6 550 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 ATCAYQ86WG3 371 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 C7orf61Q8IZ16 206 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 NEDD1Q8NHV4 660 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 RIN2Q8WYP3 895 aaPredicted RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 MRPS31Q92665 395 aaKnown RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 KIAA1143Q96AT1 154 aaPredicted RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 HPCAL4Q9UM19 191 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 KIF14Q15058 1648 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 ERICH3Q5RHP9 1530 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 SLC9A3R1O14745 358 aaPredicted RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 CRCPO75575 148 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 UPP2O95045 317 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 AP1B1Q10567 949 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 TRIM48Q8IWZ4 208 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 CCAR2Q8N163 923 aaKnown RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 FIBCD1Q8N539 461 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 CHST13Q8NET6 341 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 ATOH1Q92858 354 aaPredicted RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 LIMCH1Q9UPQ0 1083 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 TCOF1Q13428 1488 aaKnown RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 RRP8O43159 456 aaKnown RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 HOXB7P09629 217 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 DPEP1P16444 411 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 GRK4P32298 578 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 LSP1P33241 339 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 SKP1P63208 163 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 ITIH5Q86UX2 942 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 C11orf74Q86VG3 221 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 CENPKQ9BS16 269 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 IGFLR1Q9H665 355 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 DBNDD1Q9H9R9 158 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 RMND1Q9NWS8 449 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 ELOVL2Q9NXB9 296 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 CFAP45Q9UL16 551 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 MAP3K2Q9Y2U5 619 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 SH3BP1Q9Y3L3 701 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 FGBP02675 491 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 KRT19P08727 400 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 TMEM191BP0C7N4 346 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 POLGP54098 1239 aaPredicted RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 HIRAP54198 1017 aaPredicted RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 C21orf59P57076 290 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 191.5 ms