RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 GOPCQ9HD26 462 aa25.88■■□□□ 1.73
CDX1-201ENST00000231656 ZNF202O95125 648 aa25.87■■□□□ 1.73
CDX1-201ENST00000231656 CBX8Q9HC52 389 aa25.87■■□□□ 1.73
CDX1-201ENST00000231656 RTN4Q9NQC3 1192 aaKnown RBP25.87■■□□□ 1.73
CDX1-201ENST00000231656 PCDHB6Q9Y5E3 794 aa25.87■■□□□ 1.73
CDX1-201ENST00000231656 KIAA1755Q5JYT7 1200 aa25.87■■□□□ 1.73
CDX1-201ENST00000231656 TTBK2Q6IQ55 1244 aa25.87■■□□□ 1.73
CDX1-201ENST00000231656 RIOX1Q9H6W3 641 aa25.87■■□□□ 1.73
CDX1-201ENST00000231656 PICK1Q9NRD5 415 aa25.87■■□□□ 1.73
CDX1-201ENST00000231656 PAPPA2Q9BXP8 1791 aa25.87■■□□□ 1.73
CDX1-201ENST00000231656 FAM205CA6NFA0 338 aa25.86■■□□□ 1.73
CDX1-201ENST00000231656 CAVIN2O95810 425 aa25.86■■□□□ 1.73
CDX1-201ENST00000231656 NF2P35240 595 aa25.86■■□□□ 1.73
CDX1-201ENST00000231656 EARS2Q5JPH6 523 aaKnown RBP25.86■■□□□ 1.73
CDX1-201ENST00000231656 NOL9Q5SY16 702 aaKnown RBP25.86■■□□□ 1.73
CDX1-201ENST00000231656 MAP1SQ66K74 1059 aaPredicted RBP25.86■■□□□ 1.73
CDX1-201ENST00000231656 SPICE1Q8N0Z3 855 aa25.86■■□□□ 1.73
CDX1-201ENST00000231656 KRI1Q8N9T8 703 aaKnown RBP25.86■■□□□ 1.73
CDX1-201ENST00000231656 CLIC6Q96NY7 704 aa25.86■■□□□ 1.73
CDX1-201ENST00000231656 NUP88Q99567 741 aaPredicted RBP25.86■■□□□ 1.73
CDX1-201ENST00000231656 VCPKMTQ9H867 229 aa25.86■■□□□ 1.73
CDX1-201ENST00000231656 BRMS1Q9HCU9 246 aa25.86■■□□□ 1.73
CDX1-201ENST00000231656 NMRK2Q9NPI5 230 aa25.86■■□□□ 1.73
CDX1-201ENST00000231656 MORC2Q9Y6X9 1032 aaPredicted RBP25.86■■□□□ 1.73
CDX1-201ENST00000231656 OTOFQ9HC10 1997 aa25.86■■□□□ 1.73
CDX1-201ENST00000231656 PHIPQ8WWQ0 1821 aa25.85■■□□□ 1.73
CDX1-201ENST00000231656 ESPNB1AK53 854 aa25.85■■□□□ 1.73
CDX1-201ENST00000231656 PTPRAP18433 802 aa25.85■■□□□ 1.73
CDX1-201ENST00000231656 STX1AQ16623 288 aa25.85■■□□□ 1.73
CDX1-201ENST00000231656 TIGD1Q96MW7 591 aa25.85■■□□□ 1.73
CDX1-201ENST00000231656 SDF4Q9BRK5 362 aa25.85■■□□□ 1.73
CDX1-201ENST00000231656 DNAJC25Q9H1X3 360 aa25.85■■□□□ 1.73
CDX1-201ENST00000231656 FBXO2Q9UK22 296 aaPredicted RBP25.85■■□□□ 1.73
CDX1-201ENST00000231656 AP5Z1O43299 807 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 ADCY5O95622 1261 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 PTPREP23469 700 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 ZYXQ15942 572 aaKnown RBP25.84■■□□□ 1.73
CDX1-201ENST00000231656 ZNF526Q8TF50 670 aaPredicted RBP25.84■■□□□ 1.73
CDX1-201ENST00000231656 VAT1LQ9HCJ6 419 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 BMP3P12645 472 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 SLC16A2P36021 539 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 MAP3K9P80192 1104 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.84■■□□□ 1.73
CDX1-201ENST00000231656 LUZP1Q86V48 1076 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 FEZ1Q99689 392 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 SH3GLB2Q9NR46 395 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 CEP131Q9UPN4 1083 aa25.84■■□□□ 1.73
CDX1-201ENST00000231656 SYKP43405 635 aa25.83■■□□□ 1.73
CDX1-201ENST00000231656 ADGRF4Q8IZF3 695 aa25.83■■□□□ 1.73
CDX1-201ENST00000231656 RRP36Q96EU6 259 aaKnown RBP25.83■■□□□ 1.73
CDX1-201ENST00000231656 WDR18Q9BV38 432 aa25.83■■□□□ 1.73
CDX1-201ENST00000231656 KIAA1683Q9H0B3 1180 aa25.83■■□□□ 1.73
CDX1-201ENST00000231656 IREB2P48200 963 aaKnown RBP25.82■■□□□ 1.72
CDX1-201ENST00000231656 ZNF165P49910 485 aa25.82■■□□□ 1.72
CDX1-201ENST00000231656 VGLL4Q14135 290 aa25.82■■□□□ 1.72
CDX1-201ENST00000231656 LDHDQ86WU2 507 aa25.82■■□□□ 1.72
CDX1-201ENST00000231656 PIGSQ96S52 555 aa25.82■■□□□ 1.72
CDX1-201ENST00000231656 TRIM75PA6NK02 468 aa25.82■■□□□ 1.72
CDX1-201ENST00000231656 NLRP5P59047 1200 aa25.82■■□□□ 1.72
CDX1-201ENST00000231656 NOM1Q5C9Z4 860 aaKnown RBP25.82■■□□□ 1.72
CDX1-201ENST00000231656 C11orf57Q6ZUT1 292 aaPredicted RBP25.82■■□□□ 1.72
CDX1-201ENST00000231656 HOMER1Q86YM7 354 aa25.82■■□□□ 1.72
CDX1-201ENST00000231656 JMJD4Q9H9V9 463 aa25.82■■□□□ 1.72
CDX1-201ENST00000231656 AS3MTQ9HBK9 375 aa25.82■■□□□ 1.72
CDX1-201ENST00000231656 KIAA1468Q9P260 1216 aa25.82■■□□□ 1.72
CDX1-201ENST00000231656 USP17L10C9JJH3 530 aa25.81■■□□□ 1.72
CDX1-201ENST00000231656 SPP2Q13103 211 aa25.81■■□□□ 1.72
CDX1-201ENST00000231656 ZNF579Q8NAF0 562 aaKnown RBP25.81■■□□□ 1.72
CDX1-201ENST00000231656 ERCC4Q92889 916 aaPredicted RBP25.81■■□□□ 1.72
CDX1-201ENST00000231656 ANO10Q9NW15 660 aa25.81■■□□□ 1.72
CDX1-201ENST00000231656 SEC63Q9UGP8 760 aaKnown RBP25.81■■□□□ 1.72
CDX1-201ENST00000231656 NOL7Q9UMY1 257 aaKnown RBP25.81■■□□□ 1.72
CDX1-201ENST00000231656 SRPRBQ9Y5M8 271 aaKnown RBP25.81■■□□□ 1.72
CDX1-201ENST00000231656 SNCAIPQ9Y6H5 919 aa25.81■■□□□ 1.72
CDX1-201ENST00000231656 ZHX2Q9Y6X8 837 aa25.81■■□□□ 1.72
CDX1-201ENST00000231656 TMEM232C9JQI7 657 aa25.8■■□□□ 1.72
CDX1-201ENST00000231656 TRAF5O00463 557 aa25.8■■□□□ 1.72
CDX1-201ENST00000231656 ATP2B1P20020 1258 aa25.8■■□□□ 1.72
CDX1-201ENST00000231656 GRIN1Q05586 938 aa25.8■■□□□ 1.72
CDX1-201ENST00000231656 FAM83BQ5T0W9 1011 aa25.8■■□□□ 1.72
CDX1-201ENST00000231656 ZNF280CQ8ND82 737 aa25.8■■□□□ 1.72
CDX1-201ENST00000231656 CCDC39Q9UFE4 941 aa25.8■■□□□ 1.72
CDX1-201ENST00000231656 CSADQ9Y600 493 aa25.8■■□□□ 1.72
CDX1-201ENST00000231656 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.79■■□□□ 1.72
CDX1-201ENST00000231656 CALML3P27482 149 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 MTMR2Q13614 643 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 TTLL12Q14166 644 aaPredicted RBP25.79■■□□□ 1.72
CDX1-201ENST00000231656 IQCB1Q15051 598 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 MOB2Q70IA6 237 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 GPKOWQ92917 476 aaPredicted RBP eCLIP25.79■■□□□ 1.72
CDX1-201ENST00000231656 ADAMTS3O15072 1205 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 WWC2Q6AWC2 1192 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 BTNL9Q6UXG8 535 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 ZSCAN30Q86W11 494 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 LPAR1Q92633 364 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 MTMR8Q96EF0 704 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 KCNH3Q9ULD8 1083 aa25.79■■□□□ 1.72
CDX1-201ENST00000231656 WNT7AO00755 349 aa25.78■■□□□ 1.72
CDX1-201ENST00000231656 USP14P54578 494 aa25.78■■□□□ 1.72
CDX1-201ENST00000231656 BACE1P56817 501 aa25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms