RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 DPH2Q9BQC3 489 aaPredicted RBP1.5□□□□□ -2.17
VPS35-212ENST00000640313 ASPNQ9BXN1 380 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 SRCIN1Q9C0H9 1055 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 RNF38Q9H0F5 515 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 ANO2Q9NQ90 1003 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 PMF1-BGLAPU3KQ54 211 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 WDR33Q9C0J8 1336 aaKnown RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 A0A1W2PQ45 241 aaPredicted RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 A0A1W2PQY0 241 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 TMEM88BA6NKF7 163 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 ABL1P00519 1130 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 ATF2P15336 505 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 PRKCAP17252 672 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 SARSP49591 514 aaKnown RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 PCBP3P57721 371 aaKnown RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 ARHGAP4P98171 946 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 ZNF200P98182 395 aaPredicted RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 CYP4F8P98187 520 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 PDE4BQ07343 736 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 KIAA2012Q0VF49 1180 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 ZNF211Q13398 564 aaPredicted RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 FHL2Q14192 279 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 KIR3DS1Q14943 382 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 CLEC16AQ2KHT3 1053 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 PLEKHN1Q494U1 663 aaPredicted RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 GLB1LQ6UWU2 654 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 SLCO6A1Q86UG4 719 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 ZNF655Q8N720 491 aaPredicted RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 ACSF2Q96CM8 615 aaPredicted RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 EAF1Q96JC9 268 aaPredicted RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 FCRL2Q96LA5 508 aaPredicted RBP1.49□□□□□ -2.17
VPS35-212ENST00000640313 DMRTB1Q96MA1 342 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 KREMEN1Q96MU8 473 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 HDAC8Q9BY41 377 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 FOXP3Q9BZS1 431 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 KLC2Q9H0B6 622 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 CD248Q9HCU0 757 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 DLL4Q9NR61 685 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 ST6GALNAC2Q9UJ37 374 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 TCFL5Q9UL49 500 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 TAF6LQ9Y6J9 622 aa1.49□□□□□ -2.17
VPS35-212ENST00000640313 SSU72P8A0A1W2PR75 194 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 SRGAP3O43295 1099 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 NCAM1P13591 858 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 CEBPAP49715 358 aaPredicted RBP1.48□□□□□ -2.17
VPS35-212ENST00000640313 NANOS3P60323 173 aaKnown RBP1.48□□□□□ -2.17
VPS35-212ENST00000640313 KRTAP10-9P60411 292 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 RPS26P62854 115 aaKnown RBP1.48□□□□□ -2.17
VPS35-212ENST00000640313 DPTQ07507 201 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 NMIQ13287 307 aaPredicted RBP1.48□□□□□ -2.17
VPS35-212ENST00000640313 R3HDM1Q15032 1099 aaKnown RBP1.48□□□□□ -2.17
VPS35-212ENST00000640313 LARP7Q4G0J3 582 aaKnown RBP eCLIP1.48□□□□□ -2.17
VPS35-212ENST00000640313 B3GNT8Q7Z7M8 397 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 SLFN12Q8IYM2 578 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 LGI4Q8N135 537 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 AMER2Q8N7J2 671 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 DNERQ8NFT8 737 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 CHFRQ96EP1 664 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 TCTN2Q96GX1 697 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 CEP89Q96ST8 783 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 ASCC2Q9H1I8 757 aaPredicted RBP1.48□□□□□ -2.17
VPS35-212ENST00000640313 SEMA4AQ9H3S1 761 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 SPATA6Q9NWH7 488 aaPredicted RBP1.48□□□□□ -2.17
VPS35-212ENST00000640313 NTMQ9P121 344 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 INVSQ9Y283 1065 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 FAN1Q9Y2M0 1017 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 TESMINQ9Y4I5 508 aa1.48□□□□□ -2.17
VPS35-212ENST00000640313 UPK3BL1B0FP48 263 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 UPK3BL2E5RIL1 263 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 GIPC1O14908 333 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 FBXO24O75426 580 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 CYBBP04839 570 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 CELA3AP09093 270 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 ENDOUP21128 410 aaKnown RBP1.47□□□□□ -2.17
VPS35-212ENST00000640313 RGS19P49795 217 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 YARSP54577 528 aaKnown RBP1.47□□□□□ -2.17
VPS35-212ENST00000640313 ICAM4Q14773 271 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 SURF1Q15526 300 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 BBS9Q3SYG4 887 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 TMEM201Q5SNT2 666 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 PAQR3Q6TCH7 311 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 ZPBP2Q6X784 338 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 TTLL7Q6ZT98 887 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 SV2BQ7L1I2 683 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 LIMS2Q7Z4I7 341 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 GLYCTKQ8IVS8 523 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 NUP43Q8NFH3 380 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 ADAMTS17Q8TE56 1095 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 VOPP1Q96AW1 172 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 RBCK1Q9BYM8 510 aa1.47□□□□□ -2.17
VPS35-212ENST00000640313 GPR55Q9Y2T6 319 aaPredicted RBP1.47□□□□□ -2.17
VPS35-212ENST00000640313 ZNF536O15090 1300 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 MROH6A6NGR9 719 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 KRTAP29-1A8MX34 341 aaPredicted RBP1.46□□□□□ -2.18
VPS35-212ENST00000640313 H3BRB1 525 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 ASGR2P07307 311 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 SYPP08247 313 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 DBHP09172 617 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 PRR5P85299 388 aa1.46□□□□□ -2.18
VPS35-212ENST00000640313 RPL6Q02878 288 aaKnown RBP1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms