RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 EXOSC10Q01780 885 aaKnown RBP23.75■■□□□ 1.39
PTCD3-220ENST00000627371 TTBK2Q6IQ55 1244 aa23.75■■□□□ 1.39
PTCD3-220ENST00000627371 PORCNQ9H237 461 aa23.75■■□□□ 1.39
PTCD3-220ENST00000627371 GPHNQ9NQX3 736 aaPredicted RBP23.75■■□□□ 1.39
PTCD3-220ENST00000627371 HTTP42858 3142 aa23.75■■□□□ 1.39
PTCD3-220ENST00000627371 TNPO2O14787 897 aaKnown RBP23.74■■□□□ 1.39
PTCD3-220ENST00000627371 PSMA5P28066 241 aa23.74■■□□□ 1.39
PTCD3-220ENST00000627371 MAPK4P31152 587 aa23.74■■□□□ 1.39
PTCD3-220ENST00000627371 LIFRP42702 1097 aa23.74■■□□□ 1.39
PTCD3-220ENST00000627371 PKN2Q16513 984 aaKnown RBP23.74■■□□□ 1.39
PTCD3-220ENST00000627371 ASPRV1Q53RT3 343 aa23.74■■□□□ 1.39
PTCD3-220ENST00000627371 TMTC2Q8N394 836 aa23.74■■□□□ 1.39
PTCD3-220ENST00000627371 LRRC2Q9BYS8 371 aa23.74■■□□□ 1.39
PTCD3-220ENST00000627371 SLC38A10Q9HBR0 1119 aa23.74■■□□□ 1.39
PTCD3-220ENST00000627371 GPCPD1Q9NPB8 672 aa23.74■■□□□ 1.39
PTCD3-220ENST00000627371 ZNF214Q9UL59 606 aaPredicted RBP23.74■■□□□ 1.39
PTCD3-220ENST00000627371 PRR12Q9ULL5 1215 aa23.74■■□□□ 1.39
PTCD3-220ENST00000627371 ZNFX1Q9P2E3 1918 aaKnown RBP23.73■■□□□ 1.39
PTCD3-220ENST00000627371 ZBED4O75132 1171 aa23.73■■□□□ 1.39
PTCD3-220ENST00000627371 PARP1P09874 1014 aaKnown RBP23.73■■□□□ 1.39
PTCD3-220ENST00000627371 HOXD10P28358 340 aa23.73■■□□□ 1.39
PTCD3-220ENST00000627371 PLS1Q14651 629 aa23.73■■□□□ 1.39
PTCD3-220ENST00000627371 BLOC1S2Q6QNY1 142 aa23.73■■□□□ 1.39
PTCD3-220ENST00000627371 TCEANC2Q96MN5 208 aa23.73■■□□□ 1.39
PTCD3-220ENST00000627371 MOV10L1Q9BXT6 1211 aaKnown RBP23.73■■□□□ 1.39
PTCD3-220ENST00000627371 SRRDQ9UH36 339 aa23.73■■□□□ 1.39
PTCD3-220ENST00000627371 ZNF236Q9UL36 1845 aa23.73■■□□□ 1.39
PTCD3-220ENST00000627371 ATP2A1O14983 1001 aa23.72■■□□□ 1.39
PTCD3-220ENST00000627371 GOLGA8HP0CJ92 632 aa23.72■■□□□ 1.39
PTCD3-220ENST00000627371 SLC16A2P36021 539 aa23.72■■□□□ 1.39
PTCD3-220ENST00000627371 PRMT2P55345 433 aa23.72■■□□□ 1.39
PTCD3-220ENST00000627371 TROAPQ12815 778 aa23.72■■□□□ 1.39
PTCD3-220ENST00000627371 SYDE2Q5VT97 1194 aa23.72■■□□□ 1.39
PTCD3-220ENST00000627371 CATIPQ7Z7H3 387 aa23.72■■□□□ 1.39
PTCD3-220ENST00000627371 CCAR1Q8IX12 1150 aaKnown RBP23.72■■□□□ 1.39
PTCD3-220ENST00000627371 SHCBP1Q8NEM2 672 aa23.72■■□□□ 1.39
PTCD3-220ENST00000627371 COA7Q96BR5 231 aa23.72■■□□□ 1.39
PTCD3-220ENST00000627371 CTDP1Q9Y5B0 961 aaPredicted RBP23.72■■□□□ 1.39
PTCD3-220ENST00000627371 SMCHD1A6NHR9 2005 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 DDAH1O94760 285 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 CASTP20810 708 aaKnown RBP23.71■■□□□ 1.39
PTCD3-220ENST00000627371 OAZ1P54368 228 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 GRM4Q14833 912 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 FBXO46Q6PJ61 603 aaPredicted RBP23.71■■□□□ 1.39
PTCD3-220ENST00000627371 GPR142Q7Z601 462 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 SGMS1Q86VZ5 419 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 RIOX2Q8IUF8 465 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 ZNF654Q8IZM8 581 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 TEX13BQ9BXU2 312 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 MCOLN1Q9GZU1 580 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 PTPN22Q9Y2R2 807 aa23.71■■□□□ 1.39
PTCD3-220ENST00000627371 CCDC69A6NI79 296 aa23.7■■□□□ 1.38
PTCD3-220ENST00000627371 SLC25A27O95847 323 aa23.7■■□□□ 1.38
PTCD3-220ENST00000627371 CPA1P15085 419 aa23.7■■□□□ 1.38
PTCD3-220ENST00000627371 RPS6KB1P23443 525 aa23.7■■□□□ 1.38
PTCD3-220ENST00000627371 STAT3P40763 770 aa23.7■■□□□ 1.38
PTCD3-220ENST00000627371 ANAPC15P60006 121 aa23.7■■□□□ 1.38
PTCD3-220ENST00000627371 PRKCZQ05513 592 aa23.7■■□□□ 1.38
PTCD3-220ENST00000627371 NFXL1Q6ZNB6 911 aa23.7■■□□□ 1.38
PTCD3-220ENST00000627371 TM6SF1Q9BZW5 370 aa23.7■■□□□ 1.38
PTCD3-220ENST00000627371 RANBP17Q9H2T7 1088 aaKnown RBP23.7■■□□□ 1.38
PTCD3-220ENST00000627371 MAD2L2Q9UI95 211 aa23.7■■□□□ 1.38
PTCD3-220ENST00000627371 ERCC3P19447 782 aa23.69■■□□□ 1.38
PTCD3-220ENST00000627371 COPB2P35606 906 aa23.69■■□□□ 1.38
PTCD3-220ENST00000627371 PLEKHH3Q7Z736 793 aa23.69■■□□□ 1.38
PTCD3-220ENST00000627371 CPXCR1Q8N123 301 aa23.69■■□□□ 1.38
PTCD3-220ENST00000627371 MAP3K14Q99558 947 aa23.69■■□□□ 1.38
PTCD3-220ENST00000627371 MROH8Q9H579 483 aa23.69■■□□□ 1.38
PTCD3-220ENST00000627371 CWC22Q9HCG8 908 aaKnown RBP23.69■■□□□ 1.38
PTCD3-220ENST00000627371 RAVER2Q9HCJ3 691 aaKnown RBP23.69■■□□□ 1.38
PTCD3-220ENST00000627371 ZSWIM6Q9HCJ5 1215 aa23.69■■□□□ 1.38
PTCD3-220ENST00000627371 CENPFP49454 3210 aa23.69■■□□□ 1.38
PTCD3-220ENST00000627371 BAZ2BQ9UIF8 2168 aaKnown RBP23.68■■□□□ 1.38
PTCD3-220ENST00000627371 ZNF536O15090 1300 aa23.68■■□□□ 1.38
PTCD3-220ENST00000627371 PALM3A6NDB9 673 aaPredicted RBP23.68■■□□□ 1.38
PTCD3-220ENST00000627371 WDR78Q5VTH9 848 aa23.68■■□□□ 1.38
PTCD3-220ENST00000627371 SNRNP48Q6IEG0 339 aaKnown RBP23.68■■□□□ 1.38
PTCD3-220ENST00000627371 RUFY3Q7L099 469 aa23.68■■□□□ 1.38
PTCD3-220ENST00000627371 NCAPG2Q86XI2 1143 aa23.68■■□□□ 1.38
PTCD3-220ENST00000627371 STAG2Q8N3U4 1231 aa23.68■■□□□ 1.38
PTCD3-220ENST00000627371 NUP133Q8WUM0 1156 aa23.68■■□□□ 1.38
PTCD3-220ENST00000627371 IL17RAQ96F46 866 aa23.68■■□□□ 1.38
PTCD3-220ENST00000627371 GABRQQ9UN88 632 aa23.68■■□□□ 1.38
PTCD3-220ENST00000627371 SLC12A7Q9Y666 1083 aa23.68■■□□□ 1.38
PTCD3-220ENST00000627371 PLXNA1Q9UIW2 1896 aa23.67■■□□□ 1.38
PTCD3-220ENST00000627371 FLT3LGP49771 235 aa23.67■■□□□ 1.38
PTCD3-220ENST00000627371 FBXL16Q8N461 479 aa23.67■■□□□ 1.38
PTCD3-220ENST00000627371 SOCS4Q8WXH5 440 aa23.67■■□□□ 1.38
PTCD3-220ENST00000627371 MYL10Q9BUA6 226 aa23.67■■□□□ 1.38
PTCD3-220ENST00000627371 UBA5Q9GZZ9 404 aa23.67■■□□□ 1.38
PTCD3-220ENST00000627371 CPVLQ9H3G5 476 aa23.67■■□□□ 1.38
PTCD3-220ENST00000627371 GJD2Q9UKL4 321 aa23.67■■□□□ 1.38
PTCD3-220ENST00000627371 PTCH2Q9Y6C5 1203 aa23.67■■□□□ 1.38
PTCD3-220ENST00000627371 KLRF2D3W0D1 207 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 CALM1P0DP23 149 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 CALM2P0DP24 149 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 CALM3P0DP25 149 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 PTPREP23469 700 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 SNAP25P60880 206 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 FGD1P98174 961 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms