RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 BARHL2Q9NY43 387 aa11.32□□□□□ -0.6
VTA1-205ENST00000620996 BCS1LQ9Y276 419 aa11.32□□□□□ -0.6
VTA1-205ENST00000620996 SRPRBQ9Y5M8 271 aaKnown RBP11.32□□□□□ -0.6
VTA1-205ENST00000620996 C10orf71Q711Q0 1435 aa11.32□□□□□ -0.6
VTA1-205ENST00000620996 SEPT2Q15019 361 aa11.32□□□□□ -0.6
VTA1-205ENST00000620996 CCDC12Q8WUD4 166 aaPredicted RBP11.32□□□□□ -0.6
VTA1-205ENST00000620996 SYMPKQ92797 1274 aaKnown RBP11.32□□□□□ -0.6
VTA1-205ENST00000620996 CDK5RAP2Q96SN8 1893 aa11.32□□□□□ -0.6
VTA1-205ENST00000620996 C6orf50Q9HD87 102 aa11.32□□□□□ -0.6
VTA1-205ENST00000620996 TMEM51Q9NW97 253 aa11.32□□□□□ -0.6
VTA1-205ENST00000620996 BIN2Q9UBW5 565 aaPredicted RBP11.32□□□□□ -0.6
VTA1-205ENST00000620996 DLEC1Q9Y238 1755 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 PSDA5PKW4 1024 aaPredicted RBP11.31□□□□□ -0.6
VTA1-205ENST00000620996 LETM2Q2VYF4 491 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 DALRD3Q5D0E6 543 aaKnown RBP11.31□□□□□ -0.6
VTA1-205ENST00000620996 SH3BP5LQ7L8J4 393 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 DNAJC18Q9H819 358 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 HPSEQ9Y251 543 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 SCN9AQ15858 1988 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 EEF2P13639 858 aaKnown RBP11.31□□□□□ -0.6
VTA1-205ENST00000620996 FKBP1AP62942 108 aaKnown RBP11.31□□□□□ -0.6
VTA1-205ENST00000620996 HDLBPQ00341 1268 aaKnown RBP11.31□□□□□ -0.6
VTA1-205ENST00000620996 ICA1Q05084 483 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 ABCB5Q2M3G0 1257 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 ASPRV1Q53RT3 343 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 JDP2Q8WYK2 163 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 TNFRSF25Q93038 417 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 SPZ1Q9BXG8 430 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 PCDHA6Q9UN73 950 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 PCDHA8Q9Y5H6 950 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 RGPD3A6NKT7 1758 aaPredicted RBP11.31□□□□□ -0.6
VTA1-205ENST00000620996 RGPD4Q7Z3J3 1758 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 BMP15O95972 392 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 KCNA3P22001 575 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 SLC1A4P43007 532 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 STAMQ92783 540 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 TTC12Q9H892 705 aaPredicted RBP11.31□□□□□ -0.6
VTA1-205ENST00000620996 SH3GLB2Q9NR46 395 aa11.31□□□□□ -0.6
VTA1-205ENST00000620996 GH2P01242 217 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 CDC25AP30304 524 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 NLRP12P59046 1061 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 METTL16Q86W50 562 aaKnown RBP11.3□□□□□ -0.6
VTA1-205ENST00000620996 CCDC17Q96LX7 622 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 IDI2Q9BXS1 227 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.3□□□□□ -0.6
VTA1-205ENST00000620996 CCNT1O60563 726 aaKnown RBP11.3□□□□□ -0.6
VTA1-205ENST00000620996 CAVIN2O95810 425 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 PRR29P0C7W0 189 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 GNA11P29992 359 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 SNAP25P60880 206 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 SMAP1Q8IYB5 467 aaPredicted RBP11.3□□□□□ -0.6
VTA1-205ENST00000620996 CCDC34Q96HJ3 373 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 NUP88Q99567 741 aaPredicted RBP11.3□□□□□ -0.6
VTA1-205ENST00000620996 TMEM260Q9NX78 707 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 PCDHA5Q9Y5H7 936 aa11.3□□□□□ -0.6
VTA1-205ENST00000620996 GOLGA6L6A8MZA4 724 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 USP17L10C9JJH3 530 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 TPM4P67936 248 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 POSTNQ15063 836 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 SLFN13Q68D06 897 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 MIGA2Q7L4E1 593 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 ADGRF4Q8IZF3 695 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 SPICE1Q8N0Z3 855 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 FERMT2Q96AC1 680 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 TIGD1Q96MW7 591 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 PSMD1Q99460 953 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 PLIN2Q99541 437 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 TAOK3Q9H2K8 898 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 ZNRF3Q9ULT6 936 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.29□□□□□ -0.6
VTA1-205ENST00000620996 SMC2O95347 1197 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 CASP1P29466 404 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 TNNI2P48788 182 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 ZNF543Q08ER8 600 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 HSP90AA4PQ58FG1 418 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 DNTTIP2Q5QJE6 756 aaKnown RBP11.29□□□□□ -0.6
VTA1-205ENST00000620996 REXO1Q8N1G1 1221 aaKnown RBP11.29□□□□□ -0.6
VTA1-205ENST00000620996 SMARCE1Q969G3 411 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 EHD4Q9H223 541 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 GJA3Q9Y6H8 435 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 SPDYE2BA6NHP3 402 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 SPDYE6P0CI01 402 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 ADCY7P51828 1080 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 IQCB1Q15051 598 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 NONOQ15233 471 aaKnown RBP eCLIP11.29□□□□□ -0.6
VTA1-205ENST00000620996 ZYXQ15942 572 aaKnown RBP11.29□□□□□ -0.6
VTA1-205ENST00000620996 KANSL2Q9H9L4 492 aa11.29□□□□□ -0.6
VTA1-205ENST00000620996 ZNF70Q9UC06 446 aaPredicted RBP11.29□□□□□ -0.6
VTA1-205ENST00000620996 MYO3BQ8WXR4 1341 aa11.28□□□□□ -0.6
VTA1-205ENST00000620996 IGKV6D-41A0A0C4DH26 115 aa11.28□□□□□ -0.6
VTA1-205ENST00000620996 MYO1BO43795 1136 aa11.28□□□□□ -0.6
VTA1-205ENST00000620996 TXLNAP40222 546 aa11.28□□□□□ -0.6
VTA1-205ENST00000620996 TRAPPC10P48553 1259 aa11.28□□□□□ -0.6
VTA1-205ENST00000620996 ATP2C1P98194 919 aaPredicted RBP11.28□□□□□ -0.6
VTA1-205ENST00000620996 FOXP4Q8IVH2 680 aaPredicted RBP11.28□□□□□ -0.6
VTA1-205ENST00000620996 DHX40Q8IX18 779 aaKnown RBP11.28□□□□□ -0.6
VTA1-205ENST00000620996 MRIQ9BWK5 157 aa11.28□□□□□ -0.6
VTA1-205ENST00000620996 ZNF75DP51815 510 aa11.28□□□□□ -0.6
VTA1-205ENST00000620996 CBX1P83916 185 aa11.28□□□□□ -0.6
VTA1-205ENST00000620996 UBE2SQ16763 222 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms