RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 SHISA4Q96DD7 197 aa20.7■□□□□ 0.9
VRK3-225ENST00000601912 NUP88Q99567 741 aaPredicted RBP20.7■□□□□ 0.9
VRK3-225ENST00000601912 DDX49Q9Y6V7 483 aaKnown RBP20.7■□□□□ 0.9
VRK3-225ENST00000601912 WDR90Q96KV7 1748 aa20.69■□□□□ 0.9
VRK3-225ENST00000601912 ELP1O95163 1332 aa20.69■□□□□ 0.9
VRK3-225ENST00000601912 POTECB2RU33 542 aa20.69■□□□□ 0.9
VRK3-225ENST00000601912 ZBTB5O15062 677 aa20.69■□□□□ 0.9
VRK3-225ENST00000601912 NAPAP54920 295 aa20.69■□□□□ 0.9
VRK3-225ENST00000601912 CCDC84Q86UT8 332 aaPredicted RBP20.69■□□□□ 0.9
VRK3-225ENST00000601912 ZKSCAN4Q969J2 545 aaPredicted RBP20.69■□□□□ 0.9
VRK3-225ENST00000601912 KIAA1683Q9H0B3 1180 aa20.69■□□□□ 0.9
VRK3-225ENST00000601912 SSC5DA1L4H1 1573 aa20.69■□□□□ 0.9
VRK3-225ENST00000601912 USP17L10C9JJH3 530 aa20.68■□□□□ 0.9
VRK3-225ENST00000601912 USP2O75604 605 aaPredicted RBP20.68■□□□□ 0.9
VRK3-225ENST00000601912 CEBPZQ03701 1054 aaKnown RBP20.68■□□□□ 0.9
VRK3-225ENST00000601912 ZYXQ15942 572 aaKnown RBP20.68■□□□□ 0.9
VRK3-225ENST00000601912 BTNL9Q6UXG8 535 aa20.68■□□□□ 0.9
VRK3-225ENST00000601912 OXER1Q8TDS5 423 aa20.68■□□□□ 0.9
VRK3-225ENST00000601912 LEO1Q8WVC0 666 aaPredicted RBP20.68■□□□□ 0.9
VRK3-225ENST00000601912 LPAR1Q92633 364 aa20.68■□□□□ 0.9
VRK3-225ENST00000601912 MTMR8Q96EF0 704 aa20.68■□□□□ 0.9
VRK3-225ENST00000601912 USP28Q96RU2 1077 aa20.68■□□□□ 0.9
VRK3-225ENST00000601912 GLIS2Q9BZE0 524 aaPredicted RBP20.68■□□□□ 0.9
VRK3-225ENST00000601912 PCDHA4Q9UN74 947 aa20.68■□□□□ 0.9
VRK3-225ENST00000601912 PTPRAP18433 802 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 STAT2P52630 851 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 USP14P54578 494 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 NR5A1Q13285 461 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 PRKG1Q13976 671 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 NOL9Q5SY16 702 aaKnown RBP20.67■□□□□ 0.9
VRK3-225ENST00000601912 SYDE2Q5VT97 1194 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.67■□□□□ 0.9
VRK3-225ENST00000601912 CHURC1Q8WUH1 139 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 WDR18Q9BV38 432 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 POLR3EQ9NVU0 708 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 RTEL1Q9NZ71 1219 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 CLEC11AQ9Y240 323 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 MYH15Q9Y2K3 1946 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 DOCK1Q14185 1865 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 MBD3O95983 291 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 GNA11P29992 359 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 UBE2HP62256 183 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 MAP3K9P80192 1104 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 RILPL1Q5EBL4 403 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 FAM83BQ5T0W9 1011 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 BLIDQ8IZY5 108 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 CDCA5Q96FF9 252 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 C6orf50Q9HD87 102 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 RCOR1Q9UKL0 485 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 FZD1Q9UP38 647 aa20.67■□□□□ 0.9
VRK3-225ENST00000601912 GOLGA6L4A6NEF3 574 aa20.66■□□□□ 0.9
VRK3-225ENST00000601912 IREB2P48200 963 aaKnown RBP20.66■□□□□ 0.9
VRK3-225ENST00000601912 NPY5RQ15761 445 aa20.66■□□□□ 0.9
VRK3-225ENST00000601912 KLHL40Q2TBA0 621 aa20.66■□□□□ 0.9
VRK3-225ENST00000601912 KIAA1755Q5JYT7 1200 aa20.66■□□□□ 0.9
VRK3-225ENST00000601912 TYW1BQ6NUM6 668 aa20.66■□□□□ 0.9
VRK3-225ENST00000601912 DAGLBQ8NCG7 672 aa20.66■□□□□ 0.9
VRK3-225ENST00000601912 ZNF280CQ8ND82 737 aa20.66■□□□□ 0.9
VRK3-225ENST00000601912 ZMYND12Q9H0C1 365 aa20.66■□□□□ 0.9
VRK3-225ENST00000601912 PLA2G6O60733 806 aa20.65■□□□□ 0.9
VRK3-225ENST00000601912 SPP2Q13103 211 aa20.65■□□□□ 0.9
VRK3-225ENST00000601912 CDC37Q16543 378 aaPredicted RBP20.65■□□□□ 0.9
VRK3-225ENST00000601912 ANO1Q5XXA6 986 aa20.65■□□□□ 0.9
VRK3-225ENST00000601912 PPP1R18Q6NYC8 613 aa20.65■□□□□ 0.9
VRK3-225ENST00000601912 DLK2Q6UY11 383 aa20.65■□□□□ 0.9
VRK3-225ENST00000601912 FAM160B2Q86V87 743 aa20.65■□□□□ 0.9
VRK3-225ENST00000601912 FEM1BQ9UK73 627 aa20.65■□□□□ 0.9
VRK3-225ENST00000601912 CSADQ9Y600 493 aa20.65■□□□□ 0.9
VRK3-225ENST00000601912 ZHX2Q9Y6X8 837 aa20.65■□□□□ 0.9
VRK3-225ENST00000601912 ESYT2A0FGR8 921 aa20.64■□□□□ 0.9
VRK3-225ENST00000601912 SMCO2A6NFE2 343 aa20.64■□□□□ 0.9
VRK3-225ENST00000601912 WDR46O15213 610 aaKnown RBP20.64■□□□□ 0.9
VRK3-225ENST00000601912 YEATS4O95619 227 aa20.64■□□□□ 0.9
VRK3-225ENST00000601912 STK38Q15208 465 aa20.64■□□□□ 0.9
VRK3-225ENST00000601912 QRICH1Q2TAL8 776 aa20.64■□□□□ 0.9
VRK3-225ENST00000601912 BICD2Q8TD16 824 aa20.64■□□□□ 0.9
VRK3-225ENST00000601912 FTOQ9C0B1 505 aaKnown RBP eCLIP20.64■□□□□ 0.9
VRK3-225ENST00000601912 NOL7Q9UMY1 257 aaKnown RBP20.64■□□□□ 0.9
VRK3-225ENST00000601912 GADD45BO75293 160 aaPredicted RBP20.64■□□□□ 0.89
VRK3-225ENST00000601912 NASPP49321 788 aaPredicted RBP20.64■□□□□ 0.89
VRK3-225ENST00000601912 BACE1P56817 501 aa20.64■□□□□ 0.89
VRK3-225ENST00000601912 MTMR2Q13614 643 aa20.64■□□□□ 0.89
VRK3-225ENST00000601912 SF3A1Q15459 793 aaKnown RBP20.64■□□□□ 0.89
VRK3-225ENST00000601912 KCNG4Q8TDN1 519 aa20.64■□□□□ 0.89
VRK3-225ENST00000601912 TNFRSF25Q93038 417 aa20.64■□□□□ 0.89
VRK3-225ENST00000601912 COA7Q96BR5 231 aa20.64■□□□□ 0.89
VRK3-225ENST00000601912 PRR12Q9ULL5 1215 aa20.64■□□□□ 0.89
VRK3-225ENST00000601912 CLIC4Q9Y696 253 aa20.64■□□□□ 0.89
VRK3-225ENST00000601912 C19orf81C9J6K1 198 aa20.63■□□□□ 0.89
VRK3-225ENST00000601912 TRAF1Q13077 416 aa20.63■□□□□ 0.89
VRK3-225ENST00000601912 LINC00301Q8NCQ3 95 aa20.63■□□□□ 0.89
VRK3-225ENST00000601912 VGLL4Q14135 290 aa20.62■□□□□ 0.89
VRK3-225ENST00000601912 TTLL12Q14166 644 aaPredicted RBP20.62■□□□□ 0.89
VRK3-225ENST00000601912 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.62■□□□□ 0.89
VRK3-225ENST00000601912 GPT2Q8TD30 523 aa20.62■□□□□ 0.89
VRK3-225ENST00000601912 AMNQ9BXJ7 453 aa20.62■□□□□ 0.89
VRK3-225ENST00000601912 RRAGCQ9HB90 399 aa20.62■□□□□ 0.89
VRK3-225ENST00000601912 CCDC194A0A1B0GVG4 234 aa20.61■□□□□ 0.89
VRK3-225ENST00000601912 TRIM75PA6NK02 468 aa20.61■□□□□ 0.89
VRK3-225ENST00000601912 PPP1R11O60927 126 aaPredicted RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms