RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 MTMR4Q9NYA4 1195 aa28.53■■■□□ 2.16
LSM4-202ENST00000593564 LAMA2P24043 3122 aaKnown RBP28.52■■■□□ 2.16
LSM4-202ENST00000593564 AKR1A1P14550 325 aa28.52■■■□□ 2.16
LSM4-202ENST00000593564 RNF180Q86T96 592 aa28.52■■■□□ 2.16
LSM4-202ENST00000593564 CNPY2Q9Y2B0 182 aa28.52■■■□□ 2.16
LSM4-202ENST00000593564 STXBP5LQ9Y2K9 1186 aa28.52■■■□□ 2.16
LSM4-202ENST00000593564 RIPK3Q9Y572 518 aa28.52■■■□□ 2.16
LSM4-202ENST00000593564 PCDHB15Q9Y5E8 787 aa28.52■■■□□ 2.16
LSM4-202ENST00000593564 LTBP2Q14767 1821 aa28.52■■■□□ 2.16
LSM4-202ENST00000593564 SMCHD1A6NHR9 2005 aa28.52■■■□□ 2.16
LSM4-202ENST00000593564 PLIN4Q96Q06 1357 aa28.51■■■□□ 2.16
LSM4-202ENST00000593564 PLXNA1Q9UIW2 1896 aa28.51■■■□□ 2.15
LSM4-202ENST00000593564 ZBED4O75132 1171 aa28.51■■■□□ 2.15
LSM4-202ENST00000593564 GMCL1P1Q8NEA9 526 aa28.51■■■□□ 2.15
LSM4-202ENST00000593564 PRDM5Q9NQX1 630 aaPredicted RBP28.51■■■□□ 2.15
LSM4-202ENST00000593564 PDLIM7Q9NR12 457 aa28.51■■■□□ 2.15
LSM4-202ENST00000593564 SYNGAP1Q96PV0 1343 aa28.5■■■□□ 2.15
LSM4-202ENST00000593564 DNAJC25-GNG10A0A024R161 153 aa28.5■■■□□ 2.15
LSM4-202ENST00000593564 TTLL1O95922 423 aa28.5■■■□□ 2.15
LSM4-202ENST00000593564 PGK1P00558 417 aa28.5■■■□□ 2.15
LSM4-202ENST00000593564 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.5■■■□□ 2.154e-8■■■□□ 18.3
LSM4-202ENST00000593564 SEC62Q99442 399 aaKnown RBP28.5■■■□□ 2.15
LSM4-202ENST00000593564 SLC38A10Q9HBR0 1119 aa28.5■■■□□ 2.15
LSM4-202ENST00000593564 FEM1BQ9UK73 627 aa28.5■■■□□ 2.15
LSM4-202ENST00000593564 FAM109BQ6ICB4 259 aaPredicted RBP28.49■■■□□ 2.15
LSM4-202ENST00000593564 MAMDC4Q6UXC1 1216 aa28.49■■■□□ 2.15
LSM4-202ENST00000593564 NEDD1Q8NHV4 660 aa28.49■■■□□ 2.15
LSM4-202ENST00000593564 OTUD7AQ8TE49 926 aaPredicted RBP28.49■■■□□ 2.15
LSM4-202ENST00000593564 KIFC2Q96AC6 838 aa28.49■■■□□ 2.15
LSM4-202ENST00000593564 DDX11Q96FC9 970 aa28.49■■■□□ 2.15
LSM4-202ENST00000593564 FSD1Q9BTV5 496 aa28.49■■■□□ 2.15
LSM4-202ENST00000593564 CTDP1Q9Y5B0 961 aaPredicted RBP28.49■■■□□ 2.15
LSM4-202ENST00000593564 A0A0C4DFX4 3053 aa28.49■■■□□ 2.15
LSM4-202ENST00000593564 POTEB2H3BUK9 544 aa28.48■■■□□ 2.15
LSM4-202ENST00000593564 PDE4BQ07343 736 aa28.48■■■□□ 2.15
LSM4-202ENST00000593564 ZMYM1Q5SVZ6 1142 aa28.48■■■□□ 2.15
LSM4-202ENST00000593564 ZNF467Q7Z7K2 595 aaPredicted RBP28.48■■■□□ 2.15
LSM4-202ENST00000593564 CPXCR1Q8N123 301 aa28.48■■■□□ 2.15
LSM4-202ENST00000593564 LRRC47Q8N1G4 583 aaKnown RBP28.48■■■□□ 2.15
LSM4-202ENST00000593564 MYH4Q9Y623 1939 aa28.47■■■□□ 2.15
LSM4-202ENST00000593564 ADAMTS4O75173 837 aa28.47■■■□□ 2.15
LSM4-202ENST00000593564 SLC3A2P08195 630 aaKnown RBP28.47■■■□□ 2.15
LSM4-202ENST00000593564 TSPY3P0CV98 308 aa28.47■■■□□ 2.15
LSM4-202ENST00000593564 TSPY8P0CW00 308 aa28.47■■■□□ 2.15
LSM4-202ENST00000593564 OAZ1P54368 228 aa28.47■■■□□ 2.15
LSM4-202ENST00000593564 TLE2Q04725 743 aa28.47■■■□□ 2.15
LSM4-202ENST00000593564 BADQ92934 168 aa28.47■■■□□ 2.15
LSM4-202ENST00000593564 NAPBQ9H115 298 aa28.47■■■□□ 2.15
LSM4-202ENST00000593564 RAVER2Q9HCJ3 691 aaKnown RBP28.47■■■□□ 2.15
LSM4-202ENST00000593564 TRIM43BA6NCK2 446 aa28.46■■■□□ 2.15
LSM4-202ENST00000593564 SNAI1O95863 264 aaPredicted RBP28.46■■■□□ 2.15
LSM4-202ENST00000593564 MX1P20591 662 aa28.46■■■□□ 2.15
LSM4-202ENST00000593564 PPARAQ07869 468 aa28.46■■■□□ 2.15
LSM4-202ENST00000593564 SLFN13Q68D06 897 aa28.46■■■□□ 2.15
LSM4-202ENST00000593564 SH3RF1Q7Z6J0 888 aa28.46■■■□□ 2.15
LSM4-202ENST00000593564 TRIM43Q96BQ3 446 aaPredicted RBP28.46■■■□□ 2.15
LSM4-202ENST00000593564 LENG1Q96BZ8 264 aaPredicted RBP28.46■■■□□ 2.15
LSM4-202ENST00000593564 FBXO40Q9UH90 709 aa28.46■■■□□ 2.15
LSM4-202ENST00000593564 A0A1W2PQ45 241 aaPredicted RBP28.45■■■□□ 2.14
LSM4-202ENST00000593564 A0A1W2PQY0 241 aa28.45■■■□□ 2.14
LSM4-202ENST00000593564 SLC4A3P48751 1232 aa28.45■■■□□ 2.14
LSM4-202ENST00000593564 CHST13Q8NET6 341 aa28.45■■■□□ 2.14
LSM4-202ENST00000593564 TSEN34Q9BSV6 310 aaKnown RBP28.45■■■□□ 2.14
LSM4-202ENST00000593564 FAM184BQ9ULE4 1060 aa28.45■■■□□ 2.14
LSM4-202ENST00000593564 TACC3Q9Y6A5 838 aa28.45■■■□□ 2.14
LSM4-202ENST00000593564 BMP3P12645 472 aa28.44■■■□□ 2.14
LSM4-202ENST00000593564 TFAP4Q01664 338 aa28.44■■■□□ 2.14
LSM4-202ENST00000593564 SHHQ15465 462 aa28.44■■■□□ 2.14
LSM4-202ENST00000593564 SYNRGQ9UMZ2 1314 aa28.43■■■□□ 2.14
LSM4-202ENST00000593564 CLTBP09497 229 aa28.43■■■□□ 2.14
LSM4-202ENST00000593564 FDX1P10109 184 aa28.43■■■□□ 2.14
LSM4-202ENST00000593564 C9orf50Q5SZB4 431 aa28.43■■■□□ 2.14
LSM4-202ENST00000593564 ANKRD35Q8N283 1001 aa28.43■■■□□ 2.14
LSM4-202ENST00000593564 ZHX1Q9UKY1 873 aaPredicted RBP28.43■■■□□ 2.14
LSM4-202ENST00000593564 SALL3Q9BXA9 1300 aa28.43■■■□□ 2.14
LSM4-202ENST00000593564 KLHDC9Q8NEP7 349 aa28.42■■■□□ 2.14
LSM4-202ENST00000593564 GMCL1Q96IK5 515 aa28.42■■■□□ 2.14
LSM4-202ENST00000593564 FGD4Q96M96 766 aa28.42■■■□□ 2.14
LSM4-202ENST00000593564 CDKN2AIPQ9NXV6 580 aaPredicted RBP28.42■■■□□ 2.14
LSM4-202ENST00000593564 MOXD2PA6NHM9 499 aa28.41■■■□□ 2.14
LSM4-202ENST00000593564 FOXP2O15409 715 aa28.41■■■□□ 2.14
LSM4-202ENST00000593564 DUSP11O75319 330 aaKnown RBP28.41■■■□□ 2.14
LSM4-202ENST00000593564 ACLYP53396 1101 aa28.41■■■□□ 2.14
LSM4-202ENST00000593564 PPP4R3BQ5MIZ7 849 aa28.41■■■□□ 2.14
LSM4-202ENST00000593564 TMEM232C9JQI7 657 aa28.4■■■□□ 2.14
LSM4-202ENST00000593564 DLL1O00548 723 aa28.4■■■□□ 2.14
LSM4-202ENST00000593564 KIAA0355O15063 1070 aa28.4■■■□□ 2.14
LSM4-202ENST00000593564 PQBP1O60828 265 aaKnown RBP28.4■■■□□ 2.14
LSM4-202ENST00000593564 STAT2P52630 851 aa28.4■■■□□ 2.14
LSM4-202ENST00000593564 ACVR2BQ13705 512 aa28.4■■■□□ 2.14
LSM4-202ENST00000593564 NUP133Q8WUM0 1156 aa28.4■■■□□ 2.14
LSM4-202ENST00000593564 GUCD1Q96NT3 240 aa28.4■■■□□ 2.14
LSM4-202ENST00000593564 ABHD16BQ9H3Z7 469 aa28.4■■■□□ 2.14
LSM4-202ENST00000593564 DDX52Q9Y2R4 599 aaKnown RBP eCLIP28.4■■■□□ 2.14
LSM4-202ENST00000593564 ITGB8P26012 769 aa28.39■■■□□ 2.14
LSM4-202ENST00000593564 CCSAPQ6IQ19 270 aaPredicted RBP28.39■■■□□ 2.14
LSM4-202ENST00000593564 ANKRD33Q7Z3H0 272 aa28.39■■■□□ 2.14
LSM4-202ENST00000593564 FAM160B2Q86V87 743 aa28.39■■■□□ 2.14
LSM4-202ENST00000593564 CHURC1Q8WUH1 139 aa28.39■■■□□ 2.14
LSM4-202ENST00000593564 STAG1Q8WVM7 1258 aa28.39■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms