RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 MMP1P03956 469 aa17.61■□□□□ 0.41
SS18-215ENST00000580642 PRPF38AQ8NAV1 312 aaKnown RBP17.61■□□□□ 0.41
SS18-215ENST00000580642 PROCA1Q8NCQ7 364 aaPredicted RBP17.61■□□□□ 0.41
SS18-215ENST00000580642 PHF20Q9BVI0 1012 aa17.61■□□□□ 0.41
SS18-215ENST00000580642 UBA5Q9GZZ9 404 aa17.61■□□□□ 0.41
SS18-215ENST00000580642 FOXP1Q9H334 677 aaPredicted RBP17.61■□□□□ 0.41
SS18-215ENST00000580642 MYPNQ86TC9 1320 aa17.61■□□□□ 0.41
SS18-215ENST00000580642 TRAF5O00463 557 aa17.6■□□□□ 0.41
SS18-215ENST00000580642 VCAM1P19320 739 aa17.6■□□□□ 0.41
SS18-215ENST00000580642 U2AF2P26368 475 aaKnown RBP eCLIP17.6■□□□□ 0.411e-7■■■□□ 18.2
SS18-215ENST00000580642 KIAA1755Q5JYT7 1200 aa17.6■□□□□ 0.41
SS18-215ENST00000580642 FAM83BQ5T0W9 1011 aa17.6■□□□□ 0.41
SS18-215ENST00000580642 TTBK2Q6IQ55 1244 aa17.6■□□□□ 0.41
SS18-215ENST00000580642 DLK2Q6UY11 383 aa17.6■□□□□ 0.41
SS18-215ENST00000580642 SPICE1Q8N0Z3 855 aa17.6■□□□□ 0.41
SS18-215ENST00000580642 ZNF526Q8TF50 670 aaPredicted RBP17.6■□□□□ 0.41
SS18-215ENST00000580642 SLC10A4Q96EP9 437 aa17.6■□□□□ 0.41
SS18-215ENST00000580642 PIGSQ96S52 555 aa17.6■□□□□ 0.41
SS18-215ENST00000580642 A0A0G2JLL6 359 aaPredicted RBP17.59■□□□□ 0.41
SS18-215ENST00000580642 TRIM75PA6NK02 468 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 CELF2O95319 508 aaKnown RBP17.59■□□□□ 0.41
SS18-215ENST00000580642 GNA11P29992 359 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 IKQ13123 557 aaPredicted RBP17.59■□□□□ 0.41
SS18-215ENST00000580642 RESTQ13127 1097 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 MCTP2Q6DN12 878 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 FASTKD5Q7L8L6 764 aaKnown RBP17.59■□□□□ 0.41
SS18-215ENST00000580642 RASGRP2Q7LDG7 609 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 PRRT2Q7Z6L0 340 aaPredicted RBP17.59■□□□□ 0.41
SS18-215ENST00000580642 DAGLBQ8NCG7 672 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 SMC1BQ8NDV3 1235 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 BICD2Q8TD16 824 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 SLF1Q9BQI6 1058 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 RANBP17Q9H2T7 1088 aaKnown RBP17.59■□□□□ 0.41
SS18-215ENST00000580642 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.59■□□□□ 0.41
SS18-215ENST00000580642 PRR12Q9ULL5 1215 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 ISY1Q9ULR0 285 aaKnown RBP17.59■□□□□ 0.41
SS18-215ENST00000580642 FZD1Q9UP38 647 aa17.59■□□□□ 0.41
SS18-215ENST00000580642 USP17L15C9J2P7 530 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 USP17L13C9JLJ4 530 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 USP17L11C9JVI0 530 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 USP17L18D6R9N7 530 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 USP17L22D6RA61 530 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 USP17L17D6RBQ6 530 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 USP17L19D6RCP7 530 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 USP17L20D6RJB6 530 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 UBE2Q2LH0YL09 131 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 STXBP3O00186 592 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 PPFIA3O75145 1194 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 SLC16A2P36021 539 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 KIF23Q02241 960 aaPredicted RBP17.58■□□□□ 0.4
SS18-215ENST00000580642 USP17L24Q0WX57 530 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 CDC37Q16543 378 aaPredicted RBP17.58■□□□□ 0.4
SS18-215ENST00000580642 HEATR3Q7Z4Q2 680 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 CCDC84Q86UT8 332 aaPredicted RBP17.58■□□□□ 0.4
SS18-215ENST00000580642 AIFM3Q96NN9 605 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 NUP88Q99567 741 aaPredicted RBP17.58■□□□□ 0.4
SS18-215ENST00000580642 AMNQ9BXJ7 453 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 MAF1Q9H063 256 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 ZMYND12Q9H0C1 365 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 ELP3Q9H9T3 547 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 VAT1LQ9HCJ6 419 aa17.58■□□□□ 0.4
SS18-215ENST00000580642 KIF3CO14782 793 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 ZBTB48P10074 688 aaPredicted RBP17.57■□□□□ 0.4
SS18-215ENST00000580642 PTMSP20962 102 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 HOXA7P31268 230 aaPredicted RBP17.57■□□□□ 0.4
SS18-215ENST00000580642 KRT2P35908 639 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 HMGCS2P54868 508 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 NLRP5P59047 1200 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 PABPC4Q13310 644 aaKnown RBP eCLIP17.57■□□□□ 0.4
SS18-215ENST00000580642 ZYXQ15942 572 aaKnown RBP17.57■□□□□ 0.4
SS18-215ENST00000580642 WWC2Q6AWC2 1192 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 HOMER1Q86YM7 354 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 OPTNQ96CV9 577 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 C6orf50Q9HD87 102 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 HOXC10Q9NYD6 342 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 VPS54Q9P1Q0 977 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 PPP1R9AQ9ULJ8 1098 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 PCDHA4Q9UN74 947 aa17.57■□□□□ 0.4
SS18-215ENST00000580642 PASKQ96RG2 1323 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 GOLGA6L22H0YM25 854 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 IRF6O14896 467 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 OAZ1P54368 228 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 NAPAP54920 295 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 SNAPC2Q13487 334 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 GNL2Q13823 731 aaKnown RBP17.56■□□□□ 0.4
SS18-215ENST00000580642 COG2Q14746 738 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 CSPP1Q1MSJ5 1256 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 QRICH1Q2TAL8 776 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 MCTP1Q6DN14 999 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 CATSPERGQ6ZRH7 1159 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 FBXO11Q86XK2 927 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 DIS3L2Q8IYB7 885 aaKnown RBP17.56■□□□□ 0.4
SS18-215ENST00000580642 SAMD3Q8N6K7 520 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 OTUD5Q96G74 571 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 CLMNQ96JQ2 1002 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 CPVLQ9H3G5 476 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 RPAP3Q9H6T3 665 aaPredicted RBP17.56■□□□□ 0.4
SS18-215ENST00000580642 ZNF408Q9H9D4 720 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 CFAP45Q9UL16 551 aa17.56■□□□□ 0.4
SS18-215ENST00000580642 ADAMTS5Q9UNA0 930 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms