RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 SYKP43405 635 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 ATXN3P54252 364 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 PPARAQ07869 468 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CUL4BQ13620 913 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM47AQ5JRC9 791 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 TAF3Q5VWG9 929 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 C4orf50Q6ZRC1 276 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 PDZD4Q76G19 769 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 HAUS6Q7Z4H7 955 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 MRPL50Q8N5N7 158 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 SNX29Q8TEQ0 813 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 LEO1Q8WVC0 666 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 LMBR1Q8WVP7 490 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 N4BP2L2Q92802 583 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM167AQ96KS9 214 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 NAA15Q9BXJ9 866 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 FHDC1Q9C0D6 1143 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 SNX25Q9H3E2 840 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 GREM2Q9H772 168 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CGNQ9P2M7 1197 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 DPP7Q9UHL4 492 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 PCDHB13Q9Y5F0 798 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 PLEKHG2Q9H7P9 1386 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CFAP65Q6ZU64 1925 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 SMCO2A6NFE2 343 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 ZNF233A6NK53 670 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 TRAF5O00463 557 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CETN3O15182 167 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 PPFIA3O75145 1194 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 ERLIN1O75477 346 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 DNA2P51530 1060 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 GPSM2P81274 684 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 NEDD9Q14511 834 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 POSTNQ15063 836 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 DCAF17Q5H9S7 520 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 TWF2Q6IBS0 349 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 SDE2Q6IQ49 451 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CHADLQ6NUI6 762 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CAVIN1Q6NZI2 390 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 RNF207Q6ZRF8 634 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC50Q8IVM0 306 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 SLFN12Q8IYM2 578 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 NDUFAF2Q8N183 169 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC89Q8N998 374 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CCT6BQ92526 530 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 SUCLG2Q96I99 432 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 GAS2L1Q99501 681 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 SEPT9Q9UHD8 586 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 ATP6V0A2Q9Y487 856 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 PTCH1Q13635 1447 aa3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 CEP170BQ9Y4F5 1589 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA6L7A0A1B0GV03 622 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 WDR64B1ANS9 1081 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 KLRF2D3W0D1 207 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 VAMP4O75379 141 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 STAG3L1P0CL83 205 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SDSP20132 328 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ABCD1P33897 745 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 KRT9P35527 623 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 STAT3P40763 770 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 MMP14P50281 582 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PDE1AP54750 535 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 INHBEP58166 350 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 TNNC1P63316 161 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SCARF1Q14162 830 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 CALCRLQ16602 461 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 KRT24Q2M2I5 525 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ASPRV1Q53RT3 343 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PRR16Q569H4 304 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 HERC4Q5GLZ8 1057 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM117BQ6P1L5 589 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PDXDC2PQ6P474 469 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GSTA5Q7RTV2 222 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 NLRP10Q86W26 655 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM177A1Q8N128 213 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 KBTBD3Q8NAB2 608 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PNMA1Q8ND90 353 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GPRC5AQ8NFJ5 357 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 DYDC1Q8WWB3 177 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SLF1Q9BQI6 1058 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC77Q9BR77 488 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 IQCGQ9H095 443 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 RNF208Q9H0X6 261 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ST7Q9NRC1 585 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ATP11BQ9Y2G3 1177 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 NDUFB9Q9Y6M9 179 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ATP10DQ9P241 1426 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 MYO3AQ8NEV4 1616 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 HEG1Q9ULI3 1381 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SPATA31A5Q5VU36 1347 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SPATA31A7Q8IWB4 1347 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA8CPA6NN73 597 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 E7EVH7 732 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 UBE2Q2LH0YL09 131 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 CHL1O00533 1208 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 UPP2O95045 317 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SEC24BO95487 1268 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PSAPP07602 524 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SUPT20HL2P0C7V6 817 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms