RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 FLT3LGP49771 235 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 ZNF543Q08ER8 600 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 FBXO46Q6PJ61 603 aaPredicted RBP10.85□□□□□ -0.67
VPS35-206ENST00000565228 KIAA1211Q6ZU35 1233 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 GPR142Q7Z601 462 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 NCOA7Q8NI08 942 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 SH3TC2Q8TF17 1288 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 KIFC2Q96AC6 838 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 TTC14Q96N46 770 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 SLF1Q9BQI6 1058 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 MYL10Q9BUA6 226 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 KRT23Q9C075 422 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 UBA5Q9GZZ9 404 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 SPATC1LQ9H0A9 340 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 SH2D4AQ9H788 454 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 GPCPD1Q9NPB8 672 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 PRR12Q9ULL5 1215 aa10.85□□□□□ -0.67
VPS35-206ENST00000565228 MYPNQ86TC9 1320 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 PRC1O43663 620 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 COBLO75128 1261 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 FMNL1O95466 1100 aaPredicted RBP10.84□□□□□ -0.67
VPS35-206ENST00000565228 ERCC3P19447 782 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 SLC1A4P43007 532 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 CCL14Q16627 93 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 BTNL9Q6UXG8 535 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 RAB11FIP4Q86YS3 637 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 PNMA1Q8ND90 353 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 NPLOC4Q8TAT6 608 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 FGD4Q96M96 766 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 AGBL1Q96MI9 1066 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 SLC38A10Q9HBR0 1119 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 RAVER2Q9HCJ3 691 aaKnown RBP10.84□□□□□ -0.67
VPS35-206ENST00000565228 MAD2L2Q9UI95 211 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 BRPF3Q9ULD4 1205 aa10.84□□□□□ -0.67
VPS35-206ENST00000565228 MCM3APO60318 1980 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 PLXNA1Q9UIW2 1896 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 TNPO2O14787 897 aaKnown RBP10.83□□□□□ -0.68
VPS35-206ENST00000565228 CYTH3O43739 400 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 ELNP15502 786 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 FCGRTP55899 365 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 TROAPQ12815 778 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 MTFR1Q15390 333 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 DCAF4Q8WV16 495 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 CNNM2Q9H8M5 875 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 HOXC10Q9NYD6 342 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 FEM1BQ9UK73 627 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 DDX49Q9Y6V7 483 aaKnown RBP10.83□□□□□ -0.68
VPS35-206ENST00000565228 ZNF236Q9UL36 1845 aa10.83□□□□□ -0.68
VPS35-206ENST00000565228 IFIT3O14879 490 aaKnown RBP10.82□□□□□ -0.68
VPS35-206ENST00000565228 PLA2G6O60733 806 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 PPP1R11O60927 126 aaPredicted RBP10.82□□□□□ -0.68
VPS35-206ENST00000565228 RXRAP19793 462 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 PTPREP23469 700 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 PLS1Q14651 629 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 CCDC96Q2M329 555 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 MUM1L1Q5H9M0 696 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 RIOX2Q8IUF8 465 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 CPXCR1Q8N123 301 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 PRPF38AQ8NAV1 312 aaKnown RBP10.82□□□□□ -0.68
VPS35-206ENST00000565228 TRIB2Q92519 343 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 ARMC5Q96C12 935 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 NEK1Q96PY6 1258 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 PURBQ96QR8 312 aaKnown RBP10.82□□□□□ -0.68
VPS35-206ENST00000565228 RANBP17Q9H2T7 1088 aaKnown RBP10.82□□□□□ -0.68
VPS35-206ENST00000565228 MYH6P13533 1939 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 ASTN1O14525 1302 aa10.82□□□□□ -0.68
VPS35-206ENST00000565228 POTEFA5A3E0 1075 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 PALM3A6NDB9 673 aaPredicted RBP10.81□□□□□ -0.68
VPS35-206ENST00000565228 ATP2A1O14983 1001 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 MYCP01106 439 aaPredicted RBP10.81□□□□□ -0.68
VPS35-206ENST00000565228 PGK2P07205 417 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 CYP2B6P20813 491 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 STAT3P40763 770 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 STAT2P52630 851 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 GRB14Q14449 540 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 GRM4Q14833 912 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 TMEM67Q5HYA8 995 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 IFIT1BQ5T764 474 aaKnown RBP10.81□□□□□ -0.68
VPS35-206ENST00000565228 SYDE2Q5VT97 1194 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 SNRNP48Q6IEG0 339 aaKnown RBP10.81□□□□□ -0.68
VPS35-206ENST00000565228 CCDC174Q6PII3 467 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 PLEKHH3Q7Z736 793 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 IQCA1Q86XH1 822 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 CMTR1Q8N1G2 835 aaKnown RBP10.81□□□□□ -0.68
VPS35-206ENST00000565228 GTF3C2Q8WUA4 911 aaPredicted RBP10.81□□□□□ -0.68
VPS35-206ENST00000565228 ZNF333Q96JL9 665 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 UBAC1Q9BSL1 405 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 KAT14Q9H8E8 782 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 JMJD4Q9H9V9 463 aa10.81□□□□□ -0.68
VPS35-206ENST00000565228 FAM217BQ9NTX9 383 aaPredicted RBP10.81□□□□□ -0.68
VPS35-206ENST00000565228 OPLAHO14841 1288 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 DTNBO60941 627 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 PLEKHA8P1O95397 391 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 ADORA2AP29274 412 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 MAPK4P31152 587 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 IRF5Q13568 498 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 KIF22Q14807 665 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 WTAPQ15007 396 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 PKN2Q16513 984 aaKnown RBP10.8□□□□□ -0.68
VPS35-206ENST00000565228 RALYLQ86SE5 291 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms