RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 APPBP2Q92624 585 aa10.14□□□□□ -0.79
USP28-215ENST00000545608 MAML3Q96JK9 1138 aa10.14□□□□□ -0.79
USP28-215ENST00000545608 UBE2OQ9C0C9 1292 aaKnown RBP10.14□□□□□ -0.79
USP28-215ENST00000545608 RLFQ13129 1914 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 M0R2C6 588 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 VWA5AO00534 786 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 SEPT4O43236 478 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 GPAA1O43292 621 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 SLC25A27O95847 323 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 PGK2P07205 417 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 FCER1AP12319 257 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 STAT3P40763 770 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 LRIT3Q3SXY7 679 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 IER5LQ5T953 404 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 GIMAP6Q6P9H5 292 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 RIOX2Q8IUF8 465 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 TDHQ8IZJ6 230 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 PDCD7Q8N8D1 485 aaKnown RBP10.13□□□□□ -0.79
USP28-215ENST00000545608 REPS2Q8NFH8 660 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 MMP19Q99542 508 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 NUP88Q99567 741 aaPredicted RBP10.13□□□□□ -0.79
USP28-215ENST00000545608 OCEL1Q9H607 264 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 MKNK2Q9HBH9 465 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 EPB41L4AQ9HCS5 686 aaPredicted RBP10.13□□□□□ -0.79
USP28-215ENST00000545608 GOPCQ9HD26 462 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 SLC5A4Q9NY91 659 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 PPP1R9AQ9ULJ8 1098 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 PCDHB15Q9Y5E8 787 aa10.13□□□□□ -0.79
USP28-215ENST00000545608 BAZ2AQ9UIF9 1905 aaKnown RBP10.13□□□□□ -0.79
USP28-215ENST00000545608 F5H6K3 240 aa10.12□□□□□ -0.79
USP28-215ENST00000545608 RTP1P59025 263 aa10.12□□□□□ -0.79
USP28-215ENST00000545608 KLRC3Q07444 240 aa10.12□□□□□ -0.79
USP28-215ENST00000545608 ZNF792Q3KQV3 632 aa10.12□□□□□ -0.79
USP28-215ENST00000545608 SLC39A5Q6ZMH5 540 aa10.12□□□□□ -0.79
USP28-215ENST00000545608 ARRDC4Q8NCT1 418 aa10.12□□□□□ -0.79
USP28-215ENST00000545608 OTUD7AQ8TE49 926 aaPredicted RBP10.12□□□□□ -0.79
USP28-215ENST00000545608 GPATCH3Q96I76 525 aa10.12□□□□□ -0.79
USP28-215ENST00000545608 SEC62Q99442 399 aaKnown RBP10.12□□□□□ -0.79
USP28-215ENST00000545608 NYAP2Q9P242 653 aa10.12□□□□□ -0.79
USP28-215ENST00000545608 CLIP2Q9UDT6 1046 aa10.12□□□□□ -0.79
USP28-215ENST00000545608 ZNF214Q9UL59 606 aaPredicted RBP10.12□□□□□ -0.79
USP28-215ENST00000545608 BOLA1Q9Y3E2 137 aa10.12□□□□□ -0.79
USP28-215ENST00000545608 A0A0G2JMZ2 1700 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 IGKV6D-41A0A0C4DH26 115 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 PATL2C9JE40 543 aaKnown RBP10.11□□□□□ -0.79
USP28-215ENST00000545608 PRDM1O75626 825 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 NDUFB10O96000 172 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 APPP05067 770 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 ZFYP08048 801 aaPredicted RBP10.11□□□□□ -0.79
USP28-215ENST00000545608 TAL1P17542 331 aaPredicted RBP10.11□□□□□ -0.79
USP28-215ENST00000545608 TDO2P48775 406 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 LRRC41Q15345 812 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 FAM47AQ5JRC9 791 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 Q7L0L9 218 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 IFNL3Q8IZI9 196 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 ZNF444Q8N0Y2 327 aaPredicted RBP10.11□□□□□ -0.79
USP28-215ENST00000545608 PI4K2BQ8TCG2 481 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 SLF1Q9BQI6 1058 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 DAXXQ9UER7 740 aaPredicted RBP10.11□□□□□ -0.79
USP28-215ENST00000545608 DIS3Q9Y2L1 958 aaKnown RBP10.11□□□□□ -0.79
USP28-215ENST00000545608 RIPK3Q9Y572 518 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 ROBO3Q96MS0 1386 aa10.11□□□□□ -0.79
USP28-215ENST00000545608 KBTBD13C9JR72 458 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 ZNF865P0CJ78 1059 aaPredicted RBP10.1□□□□□ -0.79
USP28-215ENST00000545608 GNAT2P19087 354 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 ADCYAP1R1P41586 468 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 KCTD2Q14681 263 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 GPR153Q6NV75 609 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 PLPP6Q8IY26 295 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 MKL1Q969V6 931 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 FERMT2Q96AC1 680 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 CEP95Q96GE4 821 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 LBHD1Q9BQE6 289 aaPredicted RBP10.1□□□□□ -0.79
USP28-215ENST00000545608 TINF2Q9BSI4 451 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 TMEM121BQ9BXQ6 578 aaPredicted RBP10.1□□□□□ -0.79
USP28-215ENST00000545608 MTMR4Q9NYA4 1195 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 NRBP1Q9UHY1 535 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 ATP11BQ9Y2G3 1177 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 RANBP2P49792 3224 aaKnown RBP10.1□□□□□ -0.79
USP28-215ENST00000545608 ZNF236Q9UL36 1845 aa10.1□□□□□ -0.79
USP28-215ENST00000545608 TTC41PQ6P2S7 1318 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 ERC2O15083 957 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 PGK1P00558 417 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 COPB2P35606 906 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 SLC4A3P48751 1232 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 IRX5P78411 483 aaPredicted RBP10.09□□□□□ -0.79
USP28-215ENST00000545608 SNX17Q15036 470 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 TRIM60Q495X7 471 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 ZMYM1Q5SVZ6 1142 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 SNRNP48Q6IEG0 339 aaKnown RBP10.09□□□□□ -0.79
USP28-215ENST00000545608 CPXCR1Q8N123 301 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 DEFB123Q8N688 67 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 PRPF38AQ8NAV1 312 aaKnown RBP10.09□□□□□ -0.79
USP28-215ENST00000545608 TEX13BQ9BXU2 312 aa10.09□□□□□ -0.79
USP28-215ENST00000545608 RAVER2Q9HCJ3 691 aaKnown RBP10.09□□□□□ -0.79
USP28-215ENST00000545608 DNAJC25-GNG10A0A024R161 153 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 ATP2A1O14983 1001 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 ATMINO43313 823 aaPredicted RBP10.08□□□□□ -0.8
USP28-215ENST00000545608 ZBED4O75132 1171 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 SNAI1O95863 264 aaPredicted RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms