RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 GTF2IRD2Q86UP8 949 aa10.29□□□□□ -0.76
NUP54-215ENST00000514313 UBR7Q8N806 425 aa10.29□□□□□ -0.76
NUP54-215ENST00000514313 MEGF10Q96KG7 1140 aa10.29□□□□□ -0.76
NUP54-215ENST00000514313 NACC1Q96RE7 527 aa10.29□□□□□ -0.76
NUP54-215ENST00000514313 DUSP23Q9BVJ7 150 aa10.29□□□□□ -0.76
NUP54-215ENST00000514313 TARS2Q9BW92 718 aaKnown RBP10.29□□□□□ -0.76
NUP54-215ENST00000514313 LEFTY1O75610 366 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 APBA3O96018 575 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 SOX5P35711 763 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 GFRA1P56159 465 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 ADGRE1Q14246 886 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 GPAT2Q6NUI2 795 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 TMC3Q7Z5M5 1100 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 BEND7Q8N7W2 519 aaPredicted RBP10.28□□□□□ -0.76
NUP54-215ENST00000514313 PRPF38AQ8NAV1 312 aaKnown RBP10.28□□□□□ -0.76
NUP54-215ENST00000514313 SLC7A14Q8TBB6 771 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 ZDHHC15Q96MV8 337 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 IRF2BPLQ9H1B7 796 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 SLC52A2Q9HAB3 445 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 TRIM39Q9HCM9 518 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 NDOR1Q9UHB4 597 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 ATP8A1Q9Y2Q0 1164 aa10.28□□□□□ -0.76
NUP54-215ENST00000514313 FAM95CA0A1B0GW59 222 aa10.27□□□□□ -0.77
NUP54-215ENST00000514313 BLACEA4D250 179 aa10.27□□□□□ -0.77
NUP54-215ENST00000514313 DNAJC8O75937 253 aaPredicted RBP10.27□□□□□ -0.77
NUP54-215ENST00000514313 LORP23490 312 aaPredicted RBP10.27□□□□□ -0.77
NUP54-215ENST00000514313 GRB10Q13322 594 aa10.27□□□□□ -0.77
NUP54-215ENST00000514313 CNNM4Q6P4Q7 775 aa10.27□□□□□ -0.77
NUP54-215ENST00000514313 BRAPQ7Z569 592 aa10.27□□□□□ -0.77
NUP54-215ENST00000514313 LRRTM3Q86VH5 581 aa10.27□□□□□ -0.77
NUP54-215ENST00000514313 FAM20CQ8IXL6 584 aa10.27□□□□□ -0.77
NUP54-215ENST00000514313 Q96M66 194 aa10.27□□□□□ -0.77
NUP54-215ENST00000514313 NKX2-4Q9H2Z4 354 aa10.27□□□□□ -0.77
NUP54-215ENST00000514313 TYW1Q9NV66 732 aaKnown RBP10.27□□□□□ -0.77
NUP54-215ENST00000514313 INTS7Q9NVH2 962 aaKnown RBP10.27□□□□□ -0.77
NUP54-215ENST00000514313 PRR13Q9NZ81 148 aa10.27□□□□□ -0.77
NUP54-215ENST00000514313 MAGEC2Q9UBF1 373 aaPredicted RBP10.27□□□□□ -0.77
NUP54-215ENST00000514313 DIS3Q9Y2L1 958 aaKnown RBP10.27□□□□□ -0.77
NUP54-215ENST00000514313 PDGFRBP09619 1106 aa10.26□□□□□ -0.77
NUP54-215ENST00000514313 CYP7A1P22680 504 aa10.26□□□□□ -0.77
NUP54-215ENST00000514313 EVA1CP58658 441 aa10.26□□□□□ -0.77
NUP54-215ENST00000514313 NTRK3Q16288 839 aa10.26□□□□□ -0.77
NUP54-215ENST00000514313 CT47A1Q5JQC4 288 aaPredicted RBP10.26□□□□□ -0.77
NUP54-215ENST00000514313 DZIP1LQ8IYY4 767 aaKnown RBP10.26□□□□□ -0.77
NUP54-215ENST00000514313 DTWD2Q8NBA8 298 aa10.26□□□□□ -0.77
NUP54-215ENST00000514313 KCTD13Q8WZ19 329 aa10.26□□□□□ -0.77
NUP54-215ENST00000514313 MINPP1Q9UNW1 487 aa10.26□□□□□ -0.77
NUP54-215ENST00000514313 MAPRE3Q9UPY8 281 aa10.26□□□□□ -0.77
NUP54-215ENST00000514313 GPR55Q9Y2T6 319 aaPredicted RBP10.26□□□□□ -0.77
NUP54-215ENST00000514313 SNRPB2P08579 225 aaKnown RBP10.25□□□□□ -0.77
NUP54-215ENST00000514313 KCNJ6P48051 423 aa10.25□□□□□ -0.77
NUP54-215ENST00000514313 MAP4K2Q12851 820 aa10.25□□□□□ -0.77
NUP54-215ENST00000514313 NFKBIBQ15653 356 aa10.25□□□□□ -0.77
NUP54-215ENST00000514313 PRSS53Q2L4Q9 553 aa10.25□□□□□ -0.77
NUP54-215ENST00000514313 DDX42Q86XP3 938 aaKnown RBP eCLIP10.25□□□□□ -0.77
NUP54-215ENST00000514313 TMEM145Q8NBT3 493 aa10.25□□□□□ -0.77
NUP54-215ENST00000514313 GSTCDQ8NEC7 633 aa10.25□□□□□ -0.77
NUP54-215ENST00000514313 C1orf159Q96HA4 380 aa10.25□□□□□ -0.77
NUP54-215ENST00000514313 DSCC1Q9BVC3 393 aa10.25□□□□□ -0.77
NUP54-215ENST00000514313 KCNF1Q9H3M0 494 aa10.25□□□□□ -0.77
NUP54-215ENST00000514313 FAM83GA6ND36 823 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 H0Y8X5 98 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 SIGLEC6O43699 453 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 VAMP4O75379 141 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 PRAMEF1O95521 474 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 FAM87AP0C7U9 286 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 GABREP78334 506 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 NFKB2Q00653 900 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 CYP4F3Q08477 520 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 FGD2Q7Z6J4 655 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 PRDM5Q9NQX1 630 aaPredicted RBP10.24□□□□□ -0.77
NUP54-215ENST00000514313 HOMER2Q9NSB8 354 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 ADAMTS8Q9UP79 889 aa10.24□□□□□ -0.77
NUP54-215ENST00000514313 MEIS1O00470 390 aa10.23□□□□□ -0.77
NUP54-215ENST00000514313 WIPF1O43516 503 aa10.23□□□□□ -0.77
NUP54-215ENST00000514313 S100BP04271 92 aaPredicted RBP10.23□□□□□ -0.77
NUP54-215ENST00000514313 AMPD2Q01433 879 aa10.23□□□□□ -0.77
NUP54-215ENST00000514313 SFRP5Q5T4F7 317 aa10.23□□□□□ -0.77
NUP54-215ENST00000514313 PAOXQ6QHF9 649 aa10.23□□□□□ -0.77
NUP54-215ENST00000514313 FERMT3Q86UX7 667 aa10.23□□□□□ -0.77
NUP54-215ENST00000514313 COX4I2Q96KJ9 171 aa10.23□□□□□ -0.77
NUP54-215ENST00000514313 CHST7Q9NS84 486 aa10.23□□□□□ -0.77
NUP54-215ENST00000514313 SF3B6Q9Y3B4 125 aaKnown RBP10.23□□□□□ -0.77
NUP54-215ENST00000514313 CBX7O95931 251 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 SCG5P05408 212 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 HOXC12P31275 282 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 ECI1P42126 302 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 DPY19L1Q2PZI1 675 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 SLC35F1Q5T1Q4 408 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 BEND4Q6ZU67 534 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 TXNRD3Q86VQ6 643 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 AFAP1L2Q8N4X5 818 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 CYP26B1Q9NR63 512 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 KCNH3Q9ULD8 1083 aa10.22□□□□□ -0.77
NUP54-215ENST00000514313 TNPO3Q9Y5L0 923 aaKnown RBP10.22□□□□□ -0.77
NUP54-215ENST00000514313 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.21□□□□□ -0.77
NUP54-215ENST00000514313 SHISA3A0PJX4 238 aa10.21□□□□□ -0.77
NUP54-215ENST00000514313 EFCAB14O75071 495 aa10.21□□□□□ -0.77
NUP54-215ENST00000514313 PARNO95453 639 aaKnown RBP10.21□□□□□ -0.77
NUP54-215ENST00000514313 NMIQ13287 307 aaPredicted RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 952.9 ms