RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 GLT1D1Q96MS3 346 aa18.9■□□□□ 0.62
HDAC6-236ENST00000498808 NECAB3Q96P71 396 aaPredicted RBP18.9■□□□□ 0.62
HDAC6-236ENST00000498808 PPP1R12CQ9BZL4 782 aa18.9■□□□□ 0.62
HDAC6-236ENST00000498808 FAM184BQ9ULE4 1060 aa18.9■□□□□ 0.62
HDAC6-236ENST00000498808 PPP1R9AQ9ULJ8 1098 aa18.9■□□□□ 0.62
HDAC6-236ENST00000498808 ADCY6O43306 1168 aa18.89■□□□□ 0.61
HDAC6-236ENST00000498808 DUSP11O75319 330 aaKnown RBP18.89■□□□□ 0.61
HDAC6-236ENST00000498808 SLC9C2Q5TAH2 1124 aa18.89■□□□□ 0.61
HDAC6-236ENST00000498808 TMEM199Q8N511 208 aa18.89■□□□□ 0.61
HDAC6-236ENST00000498808 MSL3Q8N5Y2 521 aaKnown RBP18.89■□□□□ 0.61
HDAC6-236ENST00000498808 NKX2-4Q9H2Z4 354 aa18.89■□□□□ 0.61
HDAC6-236ENST00000498808 CXXC1Q9P0U4 656 aaPredicted RBP18.89■□□□□ 0.61
HDAC6-236ENST00000498808 ZHX1Q9UKY1 873 aaPredicted RBP18.89■□□□□ 0.61
HDAC6-236ENST00000498808 BAZ2AQ9UIF9 1905 aaKnown RBP18.89■□□□□ 0.61
HDAC6-236ENST00000498808 SYNGAP1Q96PV0 1343 aa18.89■□□□□ 0.61
HDAC6-236ENST00000498808 CHD7Q9P2D1 2997 aa18.88■□□□□ 0.61
HDAC6-236ENST00000498808 TCRBV5S4A2TA0A5A2 114 aa18.88■□□□□ 0.61
HDAC6-236ENST00000498808 ASGR1P07306 291 aa18.88■□□□□ 0.61
HDAC6-236ENST00000498808 COPB2P35606 906 aa18.88■□□□□ 0.61
HDAC6-236ENST00000498808 RAB30Q15771 203 aa18.88■□□□□ 0.61
HDAC6-236ENST00000498808 MAMDC4Q6UXC1 1216 aa18.88■□□□□ 0.61
HDAC6-236ENST00000498808 FAM126BQ8IXS8 530 aa18.88■□□□□ 0.61
HDAC6-236ENST00000498808 MSRAQ9UJ68 235 aa18.88■□□□□ 0.61
HDAC6-236ENST00000498808 YBX2Q9Y2T7 364 aaKnown RBP18.88■□□□□ 0.61
HDAC6-236ENST00000498808 ZNF532Q9HCE3 1301 aa18.88■□□□□ 0.61
HDAC6-236ENST00000498808 MCM3APO60318 1980 aa18.88■□□□□ 0.61
HDAC6-236ENST00000498808 DNAJC25-GNG10A0A024R161 153 aa18.87■□□□□ 0.61
HDAC6-236ENST00000498808 ARVCFO00192 962 aa18.87■□□□□ 0.61
HDAC6-236ENST00000498808 C6orf222P0C671 652 aaPredicted RBP18.87■□□□□ 0.61
HDAC6-236ENST00000498808 EEF2P13639 858 aaKnown RBP18.87■□□□□ 0.61
HDAC6-236ENST00000498808 HOXD11P31277 338 aaPredicted RBP18.87■□□□□ 0.61
HDAC6-236ENST00000498808 FAM83BQ5T0W9 1011 aa18.87■□□□□ 0.61
HDAC6-236ENST00000498808 AACSQ86V21 672 aa18.87■□□□□ 0.61
HDAC6-236ENST00000498808 IL27Q8NEV9 243 aa18.87■□□□□ 0.61
HDAC6-236ENST00000498808 HERVK_113Q902F9 699 aa18.87■□□□□ 0.61
HDAC6-236ENST00000498808 CCDC17Q96LX7 622 aa18.87■□□□□ 0.61
HDAC6-236ENST00000498808 CYP2D7A0A087X1C5 515 aa18.86■□□□□ 0.61
HDAC6-236ENST00000498808 A0A0U1RQG5 324 aaPredicted RBP18.86■□□□□ 0.61
HDAC6-236ENST00000498808 APBB1O00213 710 aa18.86■□□□□ 0.61
HDAC6-236ENST00000498808 PRKAB2O43741 272 aa18.86■□□□□ 0.61
HDAC6-236ENST00000498808 CYP2C18P33260 490 aa18.86■□□□□ 0.61
HDAC6-236ENST00000498808 CDK8P49336 464 aa18.86■□□□□ 0.61
HDAC6-236ENST00000498808 TTF1Q15361 905 aaPredicted RBP18.86■□□□□ 0.61
HDAC6-236ENST00000498808 PCSK9Q8NBP7 692 aaKnown RBP18.86■□□□□ 0.61
HDAC6-236ENST00000498808 UPF3AQ9H1J1 476 aaKnown RBP18.86■□□□□ 0.61
HDAC6-236ENST00000498808 ARMT1Q9H993 441 aa18.86■□□□□ 0.61
HDAC6-236ENST00000498808 IL23AQ9NPF7 189 aa18.86■□□□□ 0.61
HDAC6-236ENST00000498808 CD4P01730 458 aa18.85■□□□□ 0.61
HDAC6-236ENST00000498808 BMP1P13497 986 aa18.85■□□□□ 0.61
HDAC6-236ENST00000498808 GJA9P57773 515 aa18.85■□□□□ 0.61
HDAC6-236ENST00000498808 ACVR2BQ13705 512 aa18.85■□□□□ 0.61
HDAC6-236ENST00000498808 VTI1AQ96AJ9 217 aa18.85■□□□□ 0.61
HDAC6-236ENST00000498808 TEX13BQ9BXU2 312 aa18.85■□□□□ 0.61
HDAC6-236ENST00000498808 SLC28A3Q9HAS3 691 aa18.85■□□□□ 0.61
HDAC6-236ENST00000498808 RIPK3Q9Y572 518 aa18.85■□□□□ 0.61
HDAC6-236ENST00000498808 XIRP2A4UGR9 3374 aa18.84■□□□□ 0.61
HDAC6-236ENST00000498808 CTAGE5O15320 804 aa18.84■□□□□ 0.61
HDAC6-236ENST00000498808 TFF2Q03403 129 aa18.84■□□□□ 0.61
HDAC6-236ENST00000498808 C12orf60Q5U649 245 aa18.84■□□□□ 0.61
HDAC6-236ENST00000498808 SNRNP48Q6IEG0 339 aaKnown RBP18.84■□□□□ 0.61
HDAC6-236ENST00000498808 DDX11Q96FC9 970 aa18.84■□□□□ 0.61
HDAC6-236ENST00000498808 FGD4Q96M96 766 aa18.84■□□□□ 0.61
HDAC6-236ENST00000498808 C1QTNF1Q9BXJ1 281 aa18.84■□□□□ 0.61
HDAC6-236ENST00000498808 KANSL2Q9H9L4 492 aa18.84■□□□□ 0.61
HDAC6-236ENST00000498808 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.84■□□□□ 0.61
HDAC6-236ENST00000498808 EXOC6BQ9Y2D4 811 aa18.84■□□□□ 0.61
HDAC6-236ENST00000498808 REV3LO60673 3130 aa18.84■□□□□ 0.61
HDAC6-236ENST00000498808 UMODL1Q5DID0 1318 aa18.83■□□□□ 0.61
HDAC6-236ENST00000498808 TLR3O15455 904 aaKnown RBP18.83■□□□□ 0.6
HDAC6-236ENST00000498808 CCDC144BQ3MJ40 725 aa18.83■□□□□ 0.6
HDAC6-236ENST00000498808 SLFNL1Q499Z3 407 aa18.83■□□□□ 0.6
HDAC6-236ENST00000498808 GNASQ5JWF2 1037 aa18.83■□□□□ 0.6
HDAC6-236ENST00000498808 C16orf86Q6ZW13 317 aa18.83■□□□□ 0.6
HDAC6-236ENST00000498808 ZNF467Q7Z7K2 595 aaPredicted RBP18.83■□□□□ 0.6
HDAC6-236ENST00000498808 NUP88Q99567 741 aaPredicted RBP18.83■□□□□ 0.6
HDAC6-236ENST00000498808 SPC25Q9HBM1 224 aa18.83■□□□□ 0.6
HDAC6-236ENST00000498808 GOPCQ9HD26 462 aa18.83■□□□□ 0.6
HDAC6-236ENST00000498808 GREB1LQ9C091 1923 aaPredicted RBP18.82■□□□□ 0.6
HDAC6-236ENST00000498808 GOLIM4O00461 696 aa18.82■□□□□ 0.6
HDAC6-236ENST00000498808 RAD21O60216 631 aa18.82■□□□□ 0.6
HDAC6-236ENST00000498808 FGBP02675 491 aa18.82■□□□□ 0.6
HDAC6-236ENST00000498808 RABGGTBP53611 331 aa18.82■□□□□ 0.6
HDAC6-236ENST00000498808 ZKSCAN2Q63HK3 967 aa18.82■□□□□ 0.6
HDAC6-236ENST00000498808 OTOP2Q7RTS6 562 aa18.82■□□□□ 0.6
HDAC6-236ENST00000498808 MICALL1Q8N3F8 863 aa18.82■□□□□ 0.6
HDAC6-236ENST00000498808 SLF1Q9BQI6 1058 aa18.82■□□□□ 0.6
HDAC6-236ENST00000498808 MTIF3Q9H2K0 278 aaKnown RBP18.82■□□□□ 0.6
HDAC6-236ENST00000498808 IL1RAPL2Q9NP60 686 aa18.82■□□□□ 0.6
HDAC6-236ENST00000498808 ATP8A2Q9NTI2 1148 aa18.82■□□□□ 0.6
HDAC6-236ENST00000498808 USP17L12C9JPN9 530 aa18.81■□□□□ 0.6
HDAC6-236ENST00000498808 USP17L21D6R901 530 aa18.81■□□□□ 0.6
HDAC6-236ENST00000498808 MBD4O95243 580 aa18.81■□□□□ 0.6
HDAC6-236ENST00000498808 KCNQ1P51787 676 aa18.81■□□□□ 0.6
HDAC6-236ENST00000498808 SLC43A3Q8NBI5 491 aa18.81■□□□□ 0.6
HDAC6-236ENST00000498808 DNAJC2Q99543 621 aaKnown RBP18.81■□□□□ 0.6
HDAC6-236ENST00000498808 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.81■□□□□ 0.6
HDAC6-236ENST00000498808 KATNBL1Q9H079 304 aa18.81■□□□□ 0.6
HDAC6-236ENST00000498808 TSPYL2Q9H2G4 693 aaPredicted RBP18.81■□□□□ 0.6
HDAC6-236ENST00000498808 ABHD16BQ9H3Z7 469 aa18.81■□□□□ 0.6
HDAC6-236ENST00000498808 HIPK3Q9H422 1215 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms