RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 SLFN13Q68D06 897 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 FNBP4Q8N3X1 1017 aaPredicted RBP12.28□□□□□ -0.44
HDAC6-228ENST00000486227 MARCH10Q8NA82 808 aaPredicted RBP12.28□□□□□ -0.44
HDAC6-228ENST00000486227 CACTINQ8WUQ7 758 aaKnown RBP12.28□□□□□ -0.44
HDAC6-228ENST00000486227 NRBP1Q9UHY1 535 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 PSDA5PKW4 1024 aaPredicted RBP12.27□□□□□ -0.44
HDAC6-228ENST00000486227 ATP8B1O43520 1251 aa12.27□□□□□ -0.44
HDAC6-228ENST00000486227 HSF2BPO75031 334 aa12.27□□□□□ -0.44
HDAC6-228ENST00000486227 KRT9P35527 623 aa12.27□□□□□ -0.44
HDAC6-228ENST00000486227 RTKN2Q8IZC4 609 aa12.27□□□□□ -0.44
HDAC6-228ENST00000486227 SYMPKQ92797 1274 aaKnown RBP12.27□□□□□ -0.44
HDAC6-228ENST00000486227 DNM3Q9UQ16 869 aa12.27□□□□□ -0.44
HDAC6-228ENST00000486227 COL3A1P02461 1466 aaPredicted RBP12.27□□□□□ -0.44
HDAC6-228ENST00000486227 CPDO75976 1380 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 EFCAB8A8MWE9 144 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 NOP56O00567 594 aaKnown RBP12.27□□□□□ -0.45
HDAC6-228ENST00000486227 MAEAQ7L5Y9 396 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 NELFCDQ8IXH7 590 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 CSRNP2Q9H175 543 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 PIM2Q9P1W9 311 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 SERPINB13Q9UIV8 391 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 CLRN2A0PK11 232 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 USP17L3A6NCW0 530 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 USP17L4A6NCW7 530 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 RAPGEF1Q13905 1077 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 USP17L1Q7RTZ2 530 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 IMPG2Q9BZV3 1241 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 SLC5A4Q9NY91 659 aa12.27□□□□□ -0.45
HDAC6-228ENST00000486227 CETN3O15182 167 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 MMP1P03956 469 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 OR52Z1P0C646 297 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 CYP2D6P10635 497 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 CYB5R4Q7L1T6 521 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 GPIHBP1Q8IV16 184 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 FANCLQ9NW38 375 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 ZDHHC9Q9Y397 364 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 USP42Q9H9J4 1324 aaKnown RBP12.26□□□□□ -0.45
HDAC6-228ENST00000486227 NCOA3Q9Y6Q9 1424 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 DDIT3P35638 169 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 KIF22Q14807 665 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 BRD3Q15059 726 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 TXNRD1Q16881 649 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 DNAJC21Q5F1R6 531 aaKnown RBP12.26□□□□□ -0.45
HDAC6-228ENST00000486227 CCDC122Q5T0U0 273 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 MASTLQ96GX5 879 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 ARHGEF35A5YM69 484 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 AFAP1L1Q8TED9 768 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 CAPZA3Q96KX2 299 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 IL25Q9H293 177 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 PCDHA12Q9UN75 941 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 NEDD4P46934 1319 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 DKC1O60832 514 aaKnown RBP eCLIP12.26□□□□□ -0.453e-10■■■■■ 48.8
HDAC6-228ENST00000486227 PPP6R2O75170 966 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 GALNT17Q6IS24 598 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 FAM76AQ8TAV0 307 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 CCDC17Q96LX7 622 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 PCDHA1Q9Y5I3 950 aa12.26□□□□□ -0.45
HDAC6-228ENST00000486227 TMEM232C9JQI7 657 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 ABCB5Q2M3G0 1257 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 USP17L2Q6R6M4 530 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 PLA2G12BQ9BX93 195 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 ARHGEF28Q8N1W1 1705 aaKnown RBP12.25□□□□□ -0.45
HDAC6-228ENST00000486227 ZBTB7AO95365 584 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 VPS72Q15906 364 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 SEPT7Q16181 437 aaKnown RBP12.25□□□□□ -0.45
HDAC6-228ENST00000486227 SUPT20HL1Q3ZLR7 823 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 OTUD6BQ8N6M0 293 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 GOLGA5Q8TBA6 731 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 BRIP1Q9BX63 1249 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 RFX5P48382 616 aaPredicted RBP12.25□□□□□ -0.45
HDAC6-228ENST00000486227 PRR16Q569H4 304 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 STOX1Q6ZVD7 989 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 APBB1IPQ7Z5R6 666 aaPredicted RBP12.25□□□□□ -0.45
HDAC6-228ENST00000486227 SPICE1Q8N0Z3 855 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 RFX7Q2KHR2 1363 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 GSTTP1A0A1W2PQM5 241 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 RAD17O75943 681 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 EPB41P11171 864 aaKnown RBP12.25□□□□□ -0.45
HDAC6-228ENST00000486227 IFFO1Q0D2I5 559 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 DPCR1Q3MIW9 517 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 SPECC1LQ69YQ0 1117 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 FBXO11Q86XK2 927 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 MB21D2Q8IYB1 491 aaPredicted RBP12.25□□□□□ -0.45
HDAC6-228ENST00000486227 ZNF34Q8IZ26 560 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 STAG1Q8WVM7 1258 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 PAGR1Q9BTK6 254 aa12.25□□□□□ -0.45
HDAC6-228ENST00000486227 MAP2P11137 1827 aaKnown RBP12.24□□□□□ -0.45
HDAC6-228ENST00000486227 ANKRD62A6NC57 917 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 CCDC169A6NNP5 214 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 PLEKHA8P1O95397 391 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 ZSCAN20P17040 1043 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-228ENST00000486227 SLC16A2P36021 539 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 ADKP55263 362 aaKnown RBP12.24□□□□□ -0.45
HDAC6-228ENST00000486227 TRIM14Q14142 442 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 SH3RF3Q8TEJ3 882 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-228ENST00000486227 FAM212AQ96EL1 285 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 CSRNP1Q96S65 589 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 FRMD4BQ9Y2L6 1034 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 SPATA31A1Q5TZJ5 1347 aa12.24□□□□□ -0.45
HDAC6-228ENST00000486227 CSF1RP07333 972 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms