RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 KIFC2Q96AC6 838 aa23.06■■□□□ 1.28
LIME1-205ENST00000480139 SLC38A10Q9HBR0 1119 aa23.06■■□□□ 1.28
LIME1-205ENST00000480139 CYP46A1Q9Y6A2 500 aa23.06■■□□□ 1.28
LIME1-205ENST00000480139 FRMPD2Q68DX3 1309 aaPredicted RBP23.06■■□□□ 1.28
LIME1-205ENST00000480139 CALM1P0DP23 149 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 CALM2P0DP24 149 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 CALM3P0DP25 149 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 CPA1P15085 419 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 IKQ13123 557 aaPredicted RBP23.05■■□□□ 1.28
LIME1-205ENST00000480139 GRM4Q14833 912 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 NFXL1Q6ZNB6 911 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 CD99L2Q8TCZ2 262 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 CHMP4CQ96CF2 233 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 TCEANC2Q96MN5 208 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 GPCPD1Q9NPB8 672 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 PRR12Q9ULL5 1215 aa23.05■■□□□ 1.28
LIME1-205ENST00000480139 PALM3A6NDB9 673 aaPredicted RBP23.04■■□□□ 1.28
LIME1-205ENST00000480139 ZBED4O75132 1171 aa23.04■■□□□ 1.28
LIME1-205ENST00000480139 OAZ1P54368 228 aa23.04■■□□□ 1.28
LIME1-205ENST00000480139 FCGRTP55899 365 aa23.04■■□□□ 1.28
LIME1-205ENST00000480139 TMEM132BQ14DG7 1078 aa23.04■■□□□ 1.28
LIME1-205ENST00000480139 Q3C1V9 767 aa23.04■■□□□ 1.28
LIME1-205ENST00000480139 SYDE2Q5VT97 1194 aa23.04■■□□□ 1.28
LIME1-205ENST00000480139 TTBK2Q6IQ55 1244 aa23.04■■□□□ 1.28
LIME1-205ENST00000480139 SAMD1Q6SPF0 538 aaPredicted RBP23.04■■□□□ 1.28
LIME1-205ENST00000480139 SPATC1LQ9H0A9 340 aa23.04■■□□□ 1.28
LIME1-205ENST00000480139 UPF2Q9HAU5 1272 aaKnown RBP23.04■■□□□ 1.28
LIME1-205ENST00000480139 MAD2L2Q9UI95 211 aa23.04■■□□□ 1.28
LIME1-205ENST00000480139 ZNF214Q9UL59 606 aaPredicted RBP23.04■■□□□ 1.28
LIME1-205ENST00000480139 SLC12A7Q9Y666 1083 aa23.04■■□□□ 1.28
LIME1-205ENST00000480139 PEX10O60683 326 aa23.03■■□□□ 1.28
LIME1-205ENST00000480139 RBM25P49756 843 aaKnown RBP23.03■■□□□ 1.28
LIME1-205ENST00000480139 RCAN1P53805 252 aa23.03■■□□□ 1.28
LIME1-205ENST00000480139 Q6ZUG5 572 aa23.03■■□□□ 1.28
LIME1-205ENST00000480139 SHCBP1Q8NEM2 672 aa23.03■■□□□ 1.28
LIME1-205ENST00000480139 GOLGA8HP0CJ92 632 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 CTGFP29279 349 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 MAPK4P31152 587 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 SLC16A2P36021 539 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 PSMC4P43686 418 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 FGD1P98174 961 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 CAP1Q01518 475 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 APOA5Q6Q788 366 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 TRIM47Q96LD4 638 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 TEX13BQ9BXU2 312 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 BACH2Q9BYV9 841 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 C22orf23Q9BZE7 217 aa23.02■■□□□ 1.28
LIME1-205ENST00000480139 RANBP17Q9H2T7 1088 aaKnown RBP23.02■■□□□ 1.28
LIME1-205ENST00000480139 SLC25A27O95847 323 aa23.01■■□□□ 1.27
LIME1-205ENST00000480139 KIF5BP33176 963 aa23.01■■□□□ 1.27
LIME1-205ENST00000480139 COPB2P35606 906 aa23.01■■□□□ 1.27
LIME1-205ENST00000480139 SYNE3Q6ZMZ3 975 aa23.01■■□□□ 1.27
LIME1-205ENST00000480139 CTU1Q7Z7A3 348 aaKnown RBP23.01■■□□□ 1.27
LIME1-205ENST00000480139 RIOX2Q8IUF8 465 aa23.01■■□□□ 1.27
LIME1-205ENST00000480139 CTCFLQ8NI51 663 aaPredicted RBP23.01■■□□□ 1.27
LIME1-205ENST00000480139 MOV10L1Q9BXT6 1211 aaKnown RBP23.01■■□□□ 1.27
LIME1-205ENST00000480139 UPF3BQ9BZI7 483 aaKnown RBP23.01■■□□□ 1.27
LIME1-205ENST00000480139 ARHGAP39Q9C0H5 1083 aa23.01■■□□□ 1.27
LIME1-205ENST00000480139 PORCNQ9H237 461 aa23.01■■□□□ 1.27
LIME1-205ENST00000480139 EFCC1Q9HA90 598 aa23.01■■□□□ 1.27
LIME1-205ENST00000480139 CTDP1Q9Y5B0 961 aaPredicted RBP23.01■■□□□ 1.27
LIME1-205ENST00000480139 KLRF2D3W0D1 207 aa23■■□□□ 1.27
LIME1-205ENST00000480139 STAT3P40763 770 aa23■■□□□ 1.27
LIME1-205ENST00000480139 EVCP57679 992 aa23■■□□□ 1.27
LIME1-205ENST00000480139 OTOP1Q7RTM1 612 aa23■■□□□ 1.27
LIME1-205ENST00000480139 STAG2Q8N3U4 1231 aa23■■□□□ 1.27
LIME1-205ENST00000480139 NUP133Q8WUM0 1156 aa23■■□□□ 1.27
LIME1-205ENST00000480139 BRF1Q92994 677 aa23■■□□□ 1.27
LIME1-205ENST00000480139 MYL10Q9BUA6 226 aa23■■□□□ 1.27
LIME1-205ENST00000480139 ALDH8A1Q9H2A2 487 aaPredicted RBP23■■□□□ 1.27
LIME1-205ENST00000480139 MROH8Q9H579 483 aa23■■□□□ 1.27
LIME1-205ENST00000480139 PNMA2Q9UL42 364 aa23■■□□□ 1.27
LIME1-205ENST00000480139 BRPF3Q9ULD4 1205 aa23■■□□□ 1.27
LIME1-205ENST00000480139 ZNF236Q9UL36 1845 aa23■■□□□ 1.27
LIME1-205ENST00000480139 TNPO2O14787 897 aaKnown RBP22.99■■□□□ 1.27
LIME1-205ENST00000480139 FMNL1O95466 1100 aaPredicted RBP22.99■■□□□ 1.27
LIME1-205ENST00000480139 PRMT2P55345 433 aa22.99■■□□□ 1.27
LIME1-205ENST00000480139 PLS1Q14651 629 aa22.99■■□□□ 1.27
LIME1-205ENST00000480139 CCAR1Q8IX12 1150 aaKnown RBP22.99■■□□□ 1.27
LIME1-205ENST00000480139 COA7Q96BR5 231 aa22.99■■□□□ 1.27
LIME1-205ENST00000480139 PDRG1Q9NUG6 133 aa22.99■■□□□ 1.27
LIME1-205ENST00000480139 ZNF536O15090 1300 aa22.99■■□□□ 1.27
LIME1-205ENST00000480139 NID2Q14112 1375 aa22.99■■□□□ 1.27
LIME1-205ENST00000480139 PLXNB2O15031 1838 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 KLF18A0A0U1RQI7 1052 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 ZBTB43O43298 467 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 HOXD10P28358 340 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 SMARCA1P28370 1054 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 GNAQP50148 359 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 TOB2Q14106 344 aaPredicted RBP22.98■■□□□ 1.27
LIME1-205ENST00000480139 PPP2R5BQ15173 497 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 PKN2Q16513 984 aaKnown RBP22.98■■□□□ 1.27
LIME1-205ENST00000480139 SNRNP48Q6IEG0 339 aaKnown RBP22.98■■□□□ 1.27
LIME1-205ENST00000480139 ADGRF4Q8IZF3 695 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 FANCBQ8NB91 859 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 LZTS2Q9BRK4 669 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 UBA5Q9GZZ9 404 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 TRIM17Q9Y577 477 aa22.98■■□□□ 1.27
LIME1-205ENST00000480139 ICAM1P05362 532 aa22.97■■□□□ 1.27
LIME1-205ENST00000480139 ERCC3P19447 782 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms