RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 ZNF662Q6ZS27 426 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 KCT2Q8NC54 265 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 CAMKK2Q96RR4 588 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 NOP53Q9NZM5 478 aaKnown RBP7.6□□□□□ -1.19
UPF3A-205ENST00000479712 EID1Q9Y6B2 187 aa7.6□□□□□ -1.19
UPF3A-205ENST00000479712 GPATCH8Q9UKJ3 1502 aaKnown RBP7.59□□□□□ -1.19
UPF3A-205ENST00000479712 ENPP3O14638 875 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 CLSTN1O94985 981 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 HMGB1P09429 215 aaKnown RBP7.59□□□□□ -1.19
UPF3A-205ENST00000479712 HSP90B1P14625 803 aaKnown RBP7.59□□□□□ -1.19
UPF3A-205ENST00000479712 NCLP19338 710 aaKnown RBP7.59□□□□□ -1.19
UPF3A-205ENST00000479712 HSD3B2P26439 372 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 ASPAP45381 313 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 HNRNPMP52272 730 aaKnown RBP eCLIP7.59□□□□□ -1.19
UPF3A-205ENST00000479712 NCAPHQ15003 741 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 NKG7Q16617 165 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 ANKRD34AQ69YU3 496 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 AGGF1Q8N302 714 aaeCLIP7.59□□□□□ -1.19
UPF3A-205ENST00000479712 SH3TC2Q8TF17 1288 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 ISL2Q96A47 359 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 DPH2Q9BQC3 489 aaPredicted RBP7.59□□□□□ -1.19
UPF3A-205ENST00000479712 SSU72Q9NP77 194 aaKnown RBP7.59□□□□□ -1.19
UPF3A-205ENST00000479712 PCDHB10Q9UN67 800 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 ACTL7BQ9Y614 415 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 DISP2A7MBM2 1401 aa7.59□□□□□ -1.19
UPF3A-205ENST00000479712 DLC1Q96QB1 1528 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 WASHC2CQ9Y4E1 1318 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 F8W735 103 aaPredicted RBP7.58□□□□□ -1.2
UPF3A-205ENST00000479712 ZBTB7AO95365 584 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 CCNFP41002 786 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 XP32Q5T750 250 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 MRM1Q6IN84 353 aaKnown RBP7.58□□□□□ -1.2
UPF3A-205ENST00000479712 SHISA2Q6UWI4 295 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 EEPD1Q7L9B9 569 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 PODNQ7Z5L7 613 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 UBE3DQ7Z6J8 389 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 LILRB2Q8N423 598 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 C2CD4AQ8NCU7 369 aaPredicted RBP7.58□□□□□ -1.2
UPF3A-205ENST00000479712 ST13P5Q8NFI4 369 aaPredicted RBP7.58□□□□□ -1.2
UPF3A-205ENST00000479712 KIF2CQ99661 725 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 GSX1Q9H4S2 264 aaPredicted RBP7.58□□□□□ -1.2
UPF3A-205ENST00000479712 FAM105AQ9NUU6 356 aa7.58□□□□□ -1.2
UPF3A-205ENST00000479712 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.58□□□□□ -1.2
UPF3A-205ENST00000479712 INO80Q9ULG1 1556 aaPredicted RBP7.58□□□□□ -1.2
UPF3A-205ENST00000479712 RREB1Q92766 1687 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 ARHGAP35Q9NRY4 1499 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 RGS13O14921 159 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 SLC7A5Q01650 507 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 SLBPQ14493 270 aaKnown RBP eCLIP7.57□□□□□ -1.2
UPF3A-205ENST00000479712 GRIK4Q16099 956 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 NBPF8Q3BBV2 869 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 PRAMEF13Q5VWM6 474 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 KIAA1211LQ6NV74 962 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 SMYD4Q8IYR2 804 aaPredicted RBP7.57□□□□□ -1.2
UPF3A-205ENST00000479712 TMEM130Q8N3G9 435 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 JMYQ8N9B5 988 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 CCDC74BQ96LY2 380 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 PDGFDQ9GZP0 370 aaPredicted RBP7.57□□□□□ -1.2
UPF3A-205ENST00000479712 PFDN2Q9UHV9 154 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 ZNF214Q9UL59 606 aaPredicted RBP7.57□□□□□ -1.2
UPF3A-205ENST00000479712 WDR90Q96KV7 1748 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.57□□□□□ -1.2
UPF3A-205ENST00000479712 SBNO2Q9Y2G9 1366 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 SYCP2Q9BX26 1530 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 TET3O43151 1660 aa7.57□□□□□ -1.2
UPF3A-205ENST00000479712 CST3P01034 146 aaPredicted RBP7.56□□□□□ -1.2
UPF3A-205ENST00000479712 GBP1P32455 592 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 CAP2P40123 477 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 GNPTABQ3T906 1256 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 SPATC1Q76KD6 591 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.56□□□□□ -1.2
UPF3A-205ENST00000479712 CYB5D2Q8WUJ1 264 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 KLHL6Q8WZ60 621 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 DHRS1Q96LJ7 313 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 SLC6A18Q96N87 628 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 AKTIPQ9H8T0 292 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 KANSL2Q9H9L4 492 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 AATKQ6ZMQ8 1374 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 CFAP65Q6ZU64 1925 aaKnown RBP7.56□□□□□ -1.2
UPF3A-205ENST00000479712 PREX2Q70Z35 1606 aa7.56□□□□□ -1.2
UPF3A-205ENST00000479712 MARF1Q9Y4F3 1742 aaKnown RBP7.55□□□□□ -1.2
UPF3A-205ENST00000479712 KDM2BQ8NHM5 1336 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 SART1O43290 800 aaKnown RBP7.55□□□□□ -1.2
UPF3A-205ENST00000479712 CDC45O75419 566 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 UBOX5O94941 541 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 ALX3O95076 343 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 SPATA31C1P0DKV0 1188 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 HSPA1AP0DMV8 641 aaKnown RBP7.55□□□□□ -1.2
UPF3A-205ENST00000479712 HSPA1BP0DMV9 641 aaKnown RBP7.55□□□□□ -1.2
UPF3A-205ENST00000479712 SSRP1Q08945 709 aaKnown RBP7.55□□□□□ -1.2
UPF3A-205ENST00000479712 BBS9Q3SYG4 887 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 C2orf27AQ580R0 203 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 UNC5CLQ8IV45 518 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 TMEM192Q8IY95 271 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 ZNF669Q96BR6 464 aaPredicted RBP7.55□□□□□ -1.2
UPF3A-205ENST00000479712 CEP41Q9BYV8 373 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 FOXQ1Q9C009 403 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 C19orf44Q9H6X5 657 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 FANCLQ9NW38 375 aa7.55□□□□□ -1.2
UPF3A-205ENST00000479712 ZMYM5Q9UJ78 669 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms