RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 TRIM47Q96LD4 638 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 SPATC1LQ9H0A9 340 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 R3HDMLQ9H3Y0 253 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 PTPN22Q9Y2R2 807 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 TACC3Q9Y6A5 838 aa12.51□□□□□ -0.41
UBR4-208ENST00000459947 TMEM232C9JQI7 657 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 RGS2P41220 211 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 SYDE2Q5VT97 1194 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 NUDT12Q9BQG2 462 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 VWA5AO00534 786 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 CHMP4CQ96CF2 233 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 ATG4CQ96DT6 458 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 PDHBP11177 359 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 BLOC1S2Q6QNY1 142 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 SKAP1Q86WV1 359 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 TEX2Q8IWB9 1127 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 PXYLP1Q8TE99 480 aa12.5□□□□□ -0.41
UBR4-208ENST00000459947 UPF2Q9HAU5 1272 aaKnown RBP12.5□□□□□ -0.41
UBR4-208ENST00000459947 STAT3P40763 770 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 UBXN2AP68543 259 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 SAMD3Q8N6K7 520 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 CTCFLQ8NI51 663 aaPredicted RBP12.49□□□□□ -0.41
UBR4-208ENST00000459947 RAET1EQ8TD07 263 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 SLC38A10Q9HBR0 1119 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 GRM4Q14833 912 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 NFXL1Q6ZNB6 911 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 MCOLN1Q9GZU1 580 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 INCENPQ9NQS7 918 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 XRCC5P13010 732 aaKnown RBP12.49□□□□□ -0.41
UBR4-208ENST00000459947 FGD1P98174 961 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 FBXL16Q8N461 479 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 USP26Q9BXU7 913 aa12.49□□□□□ -0.41
UBR4-208ENST00000459947 RBM28Q9NW13 759 aaKnown RBP12.49□□□□□ -0.41
UBR4-208ENST00000459947 LOC102724159A0A0B4J2E5 919 aa12.48□□□□□ -0.41
UBR4-208ENST00000459947 SH2B2O14492 632 aaPredicted RBP12.48□□□□□ -0.41
UBR4-208ENST00000459947 NMT2O60551 498 aa12.48□□□□□ -0.41
UBR4-208ENST00000459947 CNMDO75829 334 aa12.48□□□□□ -0.41
UBR4-208ENST00000459947 PWP2Q15269 919 aaKnown RBP12.48□□□□□ -0.41
UBR4-208ENST00000459947 STOX1Q6ZVD7 989 aa12.48□□□□□ -0.41
UBR4-208ENST00000459947 CYB5R4Q7L1T6 521 aa12.48□□□□□ -0.41
UBR4-208ENST00000459947 SGMS1Q86VZ5 419 aa12.48□□□□□ -0.41
UBR4-208ENST00000459947 RLFQ13129 1914 aa12.48□□□□□ -0.41
UBR4-208ENST00000459947 KIAA1755Q5JYT7 1200 aa12.48□□□□□ -0.41
UBR4-208ENST00000459947 KIFC2Q96AC6 838 aa12.48□□□□□ -0.41
UBR4-208ENST00000459947 APBA2Q99767 749 aa12.48□□□□□ -0.41
UBR4-208ENST00000459947 MOV10L1Q9BXT6 1211 aaKnown RBP12.48□□□□□ -0.41
UBR4-208ENST00000459947 RANBP17Q9H2T7 1088 aaKnown RBP12.48□□□□□ -0.41
UBR4-208ENST00000459947 DIS3Q9Y2L1 958 aaKnown RBP12.48□□□□□ -0.41
UBR4-208ENST00000459947 CCDC196A0A1B0GTZ2 297 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 PTPREP23469 700 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 KCTD2Q14681 263 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 MSL3Q8N5Y2 521 aaKnown RBP12.47□□□□□ -0.41
UBR4-208ENST00000459947 REPS2Q8NFH8 660 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 MPHOSPH6Q99547 160 aaKnown RBP12.47□□□□□ -0.41
UBR4-208ENST00000459947 ZKSCAN3Q9BRR0 538 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 B4DLN1 442 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 FCER1AP12319 257 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 MRPL12P52815 198 aaKnown RBP12.47□□□□□ -0.41
UBR4-208ENST00000459947 PLS1Q14651 629 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 GPR142Q7Z601 462 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 ARMC5Q96C12 935 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 RBM27Q9P2N5 1060 aaKnown RBP12.47□□□□□ -0.41
UBR4-208ENST00000459947 NRBP1Q9UHY1 535 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 PRR12Q9ULL5 1215 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 SLC12A7Q9Y666 1083 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 CYP46A1Q9Y6A2 500 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 PFASO15067 1338 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 MAP2K5Q13163 448 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 IGDCC4Q8TDY8 1250 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 IL17RAQ96F46 866 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 JAKMIP1Q96N16 626 aaKnown RBP12.47□□□□□ -0.41
UBR4-208ENST00000459947 BTBD7Q9P203 1132 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 SNX14Q9Y5W7 946 aa12.47□□□□□ -0.41
UBR4-208ENST00000459947 HOXC6P09630 235 aa12.46□□□□□ -0.41
UBR4-208ENST00000459947 NCAPG2Q86XI2 1143 aa12.46□□□□□ -0.41
UBR4-208ENST00000459947 ZNF654Q8IZM8 581 aa12.46□□□□□ -0.41
UBR4-208ENST00000459947 NUP88Q99567 741 aaPredicted RBP12.46□□□□□ -0.41
UBR4-208ENST00000459947 ACAD9Q9H845 621 aa12.46□□□□□ -0.41
UBR4-208ENST00000459947 ABCB11O95342 1321 aa12.46□□□□□ -0.41
UBR4-208ENST00000459947 ICAM1P05362 532 aa12.46□□□□□ -0.41
UBR4-208ENST00000459947 ANTXR2P58335 489 aa12.46□□□□□ -0.41
UBR4-208ENST00000459947 GRB14Q14449 540 aa12.46□□□□□ -0.41
UBR4-208ENST00000459947 ANKRD1Q15327 319 aa12.46□□□□□ -0.41
UBR4-208ENST00000459947 LY9Q9HBG7 655 aa12.46□□□□□ -0.41
UBR4-208ENST00000459947 EXOSC10Q01780 885 aaKnown RBP12.46□□□□□ -0.42
UBR4-208ENST00000459947 MORN1Q5T089 497 aa12.46□□□□□ -0.42
UBR4-208ENST00000459947 SNRNP48Q6IEG0 339 aaKnown RBP12.46□□□□□ -0.42
UBR4-208ENST00000459947 MMP19Q99542 508 aa12.46□□□□□ -0.42
UBR4-208ENST00000459947 TXNRD2Q9NNW7 524 aa12.46□□□□□ -0.42
UBR4-208ENST00000459947 GPCPD1Q9NPB8 672 aa12.46□□□□□ -0.42
UBR4-208ENST00000459947 FBXO28Q9NVF7 368 aa12.46□□□□□ -0.42
UBR4-208ENST00000459947 ZNF214Q9UL59 606 aaPredicted RBP12.46□□□□□ -0.42
UBR4-208ENST00000459947 TMEM132BQ14DG7 1078 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 WDR78Q5VTH9 848 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 MFSD14CQ5VZR4 134 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 KCTD1Q719H9 257 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 ERCC3P19447 782 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 RPS6KB1P23443 525 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 SLC9C1Q4G0N8 1177 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 MAP3K20Q9NYL2 800 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 331.5 ms