RNA–Protein interactions for RNA: ENST00000453259.2

LYSMD3-202, Transcript of LysM domain containing 3, humanhuman

TSL 3

Gene LYSMD3, Length 553 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-202ENST00000453259 SYNRGQ9UMZ2 1314 aa17.17■□□□□ 0.34
LYSMD3-202ENST00000453259 USP17L12C9JPN9 530 aa17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 USP17L21D6R901 530 aa17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 PPIGQ13427 754 aaKnown RBP eCLIP17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 TJAP1Q5JTD0 557 aa17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 CLEC10AQ8IUN9 316 aa17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 KLHDC9Q8NEP7 349 aa17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 SLF1Q9BQI6 1058 aa17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 CHMP4BQ9H444 224 aaKnown RBP17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 SPC25Q9HBM1 224 aa17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 FBXO28Q9NVF7 368 aa17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 TBX21Q9UL17 535 aa17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 PRUNE2Q8WUY3 3088 aa17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 SPTBN5Q9NRC6 3674 aaKnown RBP17.16■□□□□ 0.34
LYSMD3-202ENST00000453259 SMCHD1A6NHR9 2005 aa17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 DNAJC25-GNG10A0A024R161 153 aa17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 EPHB4P54760 987 aa17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 CCSAPQ6IQ19 270 aaPredicted RBP17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 MFSD5Q6N075 450 aa17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 GIMAP6Q6P9H5 292 aa17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 PRPF38AQ8NAV1 312 aaKnown RBP17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 DDX11Q96FC9 970 aa17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 HAUS7Q99871 368 aa17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 SEZ6LQ9BYH1 1024 aa17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 FBXO40Q9UH90 709 aa17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 TTC28Q96AY4 2481 aa17.15■□□□□ 0.34
LYSMD3-202ENST00000453259 GREB1LQ9C091 1923 aaPredicted RBP17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 PRKAB2O43741 272 aa17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 TAL1P17542 331 aaPredicted RBP17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 OAZ1P54368 228 aa17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 FAM83BQ5T0W9 1011 aa17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 PSRC1Q6PGN9 363 aaPredicted RBP17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 SAMD1Q6SPF0 538 aaPredicted RBP17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 TIFAQ96CG3 184 aa17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 ABHD16BQ9H3Z7 469 aa17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 ZNF576Q9H609 170 aa17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 ZNF287Q9HBT7 754 aa17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 NYAP2Q9P242 653 aa17.14■□□□□ 0.33
LYSMD3-202ENST00000453259 BAZ2AQ9UIF9 1905 aaKnown RBP17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 FDX1P10109 184 aa17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 NKX3-2P78367 333 aa17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 KCNA10Q16322 511 aa17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 SBK1Q52WX2 424 aa17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 AKNAD1Q5T1N1 836 aa17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 RASIP1Q5U651 963 aa17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 SNRNP48Q6IEG0 339 aaKnown RBP17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 CTR9Q6PD62 1173 aa17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 TMEM199Q8N511 208 aa17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 UPF3AQ9H1J1 476 aaKnown RBP17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 DDX19BQ9UMR2 479 aa17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 SLC4A4Q9Y6R1 1079 aa17.13■□□□□ 0.33
LYSMD3-202ENST00000453259 A0A0U1RQG5 324 aaPredicted RBP17.12■□□□□ 0.33
LYSMD3-202ENST00000453259 TLR3O15455 904 aaKnown RBP17.12■□□□□ 0.33
LYSMD3-202ENST00000453259 ZBED4O75132 1171 aa17.12■□□□□ 0.33
LYSMD3-202ENST00000453259 SNAI1O95863 264 aaPredicted RBP17.12■□□□□ 0.33
LYSMD3-202ENST00000453259 CDK7P50613 346 aa17.12■□□□□ 0.33
LYSMD3-202ENST00000453259 GRIN2CQ14957 1233 aa17.12■□□□□ 0.33
LYSMD3-202ENST00000453259 CHST13Q8NET6 341 aa17.12■□□□□ 0.33
LYSMD3-202ENST00000453259 ATXN2LQ8WWM7 1075 aaKnown RBP17.12■□□□□ 0.33
LYSMD3-202ENST00000453259 GAS2L1Q99501 681 aaPredicted RBP17.12■□□□□ 0.33
LYSMD3-202ENST00000453259 MTIF3Q9H2K0 278 aaKnown RBP17.12■□□□□ 0.33
LYSMD3-202ENST00000453259 MYH7P12883 1935 aa17.11■□□□□ 0.33
LYSMD3-202ENST00000453259 GJA9P57773 515 aa17.11■□□□□ 0.33
LYSMD3-202ENST00000453259 ACVR2BQ13705 512 aa17.11■□□□□ 0.33
LYSMD3-202ENST00000453259 CCDC129Q6ZRS4 1044 aa17.11■□□□□ 0.33
LYSMD3-202ENST00000453259 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.11■□□□□ 0.33
LYSMD3-202ENST00000453259 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.11■□□□□ 0.33
LYSMD3-202ENST00000453259 BOLA2Q9H3K6 86 aa17.11■□□□□ 0.33
LYSMD3-202ENST00000453259 ZHX1Q9UKY1 873 aaPredicted RBP17.11■□□□□ 0.33
LYSMD3-202ENST00000453259 CTDP1Q9Y5B0 961 aaPredicted RBP17.11■□□□□ 0.33
LYSMD3-202ENST00000453259 CYP2D7A0A087X1C5 515 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 F5H6K3 240 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 ARVCFO00192 962 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 TNFRSF10AO00220 468 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 RAD21O60216 631 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 CABYRO75952 493 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 C6orf222P0C671 652 aaPredicted RBP17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 KLRC3Q07444 240 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 RAB30Q15771 203 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 MKNK2Q9HBH9 465 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 SLC38A10Q9HBR0 1119 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 ZBTB40Q9NUA8 1239 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 FEM1BQ9UK73 627 aa17.1■□□□□ 0.33
LYSMD3-202ENST00000453259 NDUFB10O96000 172 aa17.09■□□□□ 0.33
LYSMD3-202ENST00000453259 ASGR1P07306 291 aa17.09■□□□□ 0.33
LYSMD3-202ENST00000453259 RASA1P20936 1047 aa17.09■□□□□ 0.33
LYSMD3-202ENST00000453259 TMEM240Q5SV17 173 aa17.09■□□□□ 0.33
LYSMD3-202ENST00000453259 ANKRD35Q8N283 1001 aa17.09■□□□□ 0.33
LYSMD3-202ENST00000453259 PANK1Q8TE04 598 aa17.09■□□□□ 0.33
LYSMD3-202ENST00000453259 MKL1Q969V6 931 aa17.09■□□□□ 0.33
LYSMD3-202ENST00000453259 LENG1Q96BZ8 264 aaPredicted RBP17.09■□□□□ 0.33
LYSMD3-202ENST00000453259 APBB1O00213 710 aa17.08■□□□□ 0.32
LYSMD3-202ENST00000453259 GNAT2P19087 354 aa17.08■□□□□ 0.32
LYSMD3-202ENST00000453259 HNRNPUQ00839 825 aaKnown RBP eCLIP17.08■□□□□ 0.32
LYSMD3-202ENST00000453259 CCDC144BQ3MJ40 725 aa17.08■□□□□ 0.32
LYSMD3-202ENST00000453259 GNASQ5JWF2 1037 aa17.08■□□□□ 0.32
LYSMD3-202ENST00000453259 FAM126BQ8IXS8 530 aa17.08■□□□□ 0.32
LYSMD3-202ENST00000453259 GMCL1P1Q8NEA9 526 aa17.08■□□□□ 0.32
LYSMD3-202ENST00000453259 STRBPQ96SI9 672 aaKnown RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms