RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 LRRC27Q9C0I9 530 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 POLLQ9UGP5 575 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 TNS2Q63HR2 1409 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 PRR16Q569H4 304 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 RRAGBQ5VZM2 374 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 SYT10Q6XYQ8 523 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 SMC1BQ8NDV3 1235 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 PDGFDQ9GZP0 370 aaPredicted RBP11.92□□□□□ -0.5
TCOF1-204ENST00000427724 COL3A1P02461 1466 aaPredicted RBP11.92□□□□□ -0.5
TCOF1-204ENST00000427724 ZEB2O60315 1214 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 RAD51AP2Q09MP3 1159 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 SLFNL1Q499Z3 407 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 FAM83BQ5T0W9 1011 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 MFSD14CQ5VZR4 134 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 EXOC1Q9NV70 894 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 KCNJ14Q9UNX9 436 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 KCNH4Q9UQ05 1017 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 DAGLAQ9Y4D2 1042 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 VWA3AA6NCI4 1184 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 EIF3JO75822 258 aaKnown RBP11.92□□□□□ -0.5
TCOF1-204ENST00000427724 ZSCAN20P17040 1043 aaPredicted RBP11.92□□□□□ -0.5
TCOF1-204ENST00000427724 EIF2AK2P19525 551 aaKnown RBP11.92□□□□□ -0.5
TCOF1-204ENST00000427724 GNG11P61952 73 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 NECTIN1Q15223 517 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 HS2ST1Q7LGA3 356 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 GPKOWQ92917 476 aaPredicted RBP eCLIP11.92□□□□□ -0.5
TCOF1-204ENST00000427724 CAMKK2Q96RR4 588 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 FTOQ9C0B1 505 aaKnown RBP eCLIP11.92□□□□□ -0.52e-6■□□□□ 9.3
TCOF1-204ENST00000427724 C3P01024 1663 aa11.92□□□□□ -0.5
TCOF1-204ENST00000427724 MTIF2P46199 727 aaKnown RBP11.91□□□□□ -0.5
TCOF1-204ENST00000427724 FAM193AP78312 1265 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 SNRNP48Q6IEG0 339 aaKnown RBP11.91□□□□□ -0.5
TCOF1-204ENST00000427724 TPH2Q8IWU9 490 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 DIS3L2Q8IYB7 885 aaKnown RBP11.91□□□□□ -0.5
TCOF1-204ENST00000427724 ABI1Q8IZP0 508 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 IMPG2Q9BZV3 1241 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 RAVER2Q9HCJ3 691 aaKnown RBP11.91□□□□□ -0.5
TCOF1-204ENST00000427724 MROH7-TTC4A0A0A0MT08 1334 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 FOXO4P98177 505 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 DEFB115Q30KQ5 88 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 NBPF9Q3BBW0 867 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 TXLNBQ8N3L3 684 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 CASQ1P31415 396 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 CACNA2D4Q7Z3S7 1137 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 APBB1IPQ7Z5R6 666 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-204ENST00000427724 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-204ENST00000427724 DHX58Q96C10 678 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 TTC14Q96N46 770 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 VWDEQ8N2E2 1590 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 ADD1P35611 737 aaKnown RBP11.91□□□□□ -0.5
TCOF1-204ENST00000427724 MIER3Q7Z3K6 550 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 NUP88Q99567 741 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-204ENST00000427724 RIPOR2Q9Y4F9 1068 aa11.91□□□□□ -0.5
TCOF1-204ENST00000427724 ERLIN1O75477 346 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 CYP21A2P08686 494 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 KRT13P13646 458 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 RDXP35241 583 aaKnown RBP11.9□□□□□ -0.5
TCOF1-204ENST00000427724 MTMR2Q13614 643 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 FANCBQ8NB91 859 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 KIAA1524Q8TCG1 905 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 PRMT6Q96LA8 375 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-204ENST00000427724 NAP1L4Q99733 375 aaKnown RBP11.9□□□□□ -0.5
TCOF1-204ENST00000427724 LLPHQ9BRT6 129 aaKnown RBP11.9□□□□□ -0.5
TCOF1-204ENST00000427724 RASSF4Q9H2L5 321 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 SMTNP53814 917 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 PLA2G4DQ86XP0 818 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 RUFY1Q96T51 708 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 ZNF215Q9UL58 517 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-204ENST00000427724 ZMYM1Q5SVZ6 1142 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 KRBA2Q6ZNG9 492 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 USP37Q86T82 979 aa11.9□□□□□ -0.5
TCOF1-204ENST00000427724 ZKSCAN4Q969J2 545 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-204ENST00000427724 FAM193BQ96PV7 902 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-204ENST00000427724 PARK7Q99497 189 aaKnown RBP11.9□□□□□ -0.5
TCOF1-204ENST00000427724 FGFR1OPO95684 399 aaKnown RBP11.89□□□□□ -0.51
TCOF1-204ENST00000427724 SCRN1Q12765 414 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 NFX1Q12986 1120 aaKnown RBP11.89□□□□□ -0.51
TCOF1-204ENST00000427724 MCM6Q14566 821 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 MICAL1Q8TDZ2 1067 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 BCL9O00512 1426 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 TMOD1P28289 359 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 SYDE2Q5VT97 1194 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 KRT25Q7Z3Z0 450 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 RSPH3Q86UC2 560 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 SLC4A9Q96Q91 983 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 LBHD1Q9BQE6 289 aaPredicted RBP11.89□□□□□ -0.51
TCOF1-204ENST00000427724 MYL3P08590 195 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 CETPP11597 493 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 STAT3P40763 770 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 FKBP15Q5T1M5 1219 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 NBPF11Q86T75 865 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 DPF3Q92784 378 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 FERMT2Q96AC1 680 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 DEPDC5O75140 1603 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 M0R2C6 588 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 FCER1AP12319 257 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 SPECC1Q5M775 1068 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 FAM160B2Q86V87 743 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 HACE1Q8IYU2 909 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 GPC2Q8N158 579 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms