RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 HERC4Q5GLZ8 1057 aaPredicted RBP19.46■□□□□ 0.71
SMPD4-202ENST00000409031 ZNF589Q86UQ0 364 aaPredicted RBP19.46■□□□□ 0.71
SMPD4-202ENST00000409031 ARHGEF10O15013 1369 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 CLASP1Q7Z460 1538 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 H2AFZP0C0S5 128 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 EIF3BP55884 814 aaKnown RBP19.45■□□□□ 0.7
SMPD4-202ENST00000409031 SEPT2Q15019 361 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 H2AFVQ71UI9 128 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 SDCCAG8Q86SQ7 713 aaPredicted RBP19.45■□□□□ 0.7
SMPD4-202ENST00000409031 ADGRG1Q9Y653 693 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 TXKP42681 527 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 UAP1Q16222 522 aaPredicted RBP19.45■□□□□ 0.7
SMPD4-202ENST00000409031 ARMT1Q9H993 441 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 OPHN1O60890 802 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 CORO7P57737 925 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 RASSF7Q02833 373 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 LSM14BQ9BX40 385 aaKnown RBP19.45■□□□□ 0.7
SMPD4-202ENST00000409031 KLC4Q9NSK0 619 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 MCM9Q9NXL9 1143 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 ADGBQ8N7X0 1667 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 NDC80O14777 642 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 SKIP12755 728 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 BCORL1Q5H9F3 1711 aa19.45■□□□□ 0.7
SMPD4-202ENST00000409031 CCNT1O60563 726 aaKnown RBP19.44■□□□□ 0.7
SMPD4-202ENST00000409031 USP14P54578 494 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 SESN3P58005 492 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 APBB1IPQ7Z5R6 666 aaPredicted RBP19.44■□□□□ 0.7
SMPD4-202ENST00000409031 KIFAP3Q92845 792 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 HSP90AA5PQ58FG0 334 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 DYMQ7RTS9 669 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 FANCBQ8NB91 859 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 L2HGDHQ9H9P8 463 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 NOVA2Q9UNW9 492 aaKnown RBP19.44■□□□□ 0.7
SMPD4-202ENST00000409031 I3L4J1 428 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 ZAP70P43403 619 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 MAP3K21Q5TCX8 1036 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 DDX27Q96GQ7 796 aaKnown RBP19.44■□□□□ 0.7
SMPD4-202ENST00000409031 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.44■□□□□ 0.7
SMPD4-202ENST00000409031 TMEM51Q9NW97 253 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 SAMD9Q5K651 1589 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 KDRP35968 1356 aa19.44■□□□□ 0.7
SMPD4-202ENST00000409031 STAT1P42224 750 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 NBPF10Q6P3W6 841 aaKnown RBP19.43■□□□□ 0.7
SMPD4-202ENST00000409031 TXNDC16Q9P2K2 825 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 RWDD2AQ9UIY3 292 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 MEFVO15553 781 aaPredicted RBP19.43■□□□□ 0.7
SMPD4-202ENST00000409031 ZPR1O75312 459 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 IRX1P78414 480 aaPredicted RBP19.43■□□□□ 0.7
SMPD4-202ENST00000409031 ZNF790Q6PG37 636 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 SNX29Q8TEQ0 813 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 WDR24Q96S15 920 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 B4DLN1 442 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 ACTN3Q08043 901 aaPredicted RBP19.43■□□□□ 0.7
SMPD4-202ENST00000409031 DRP2Q13474 957 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 FAM133BQ5BKY9 247 aaKnown RBP19.43■□□□□ 0.7
SMPD4-202ENST00000409031 DHTKD1Q96HY7 919 aaPredicted RBP19.43■□□□□ 0.7
SMPD4-202ENST00000409031 COPRSQ9NQ92 184 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 CTDSPL2Q05D32 466 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 TBC1D1Q86TI0 1168 aaPredicted RBP19.43■□□□□ 0.7
SMPD4-202ENST00000409031 HELBQ8NG08 1087 aaPredicted RBP19.43■□□□□ 0.7
SMPD4-202ENST00000409031 IP6K1Q92551 441 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 TXLNGQ9NUQ3 528 aa19.43■□□□□ 0.7
SMPD4-202ENST00000409031 H2AFXP16104 143 aaPredicted RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 LONP1P36776 959 aaKnown RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 BIRC3Q13489 604 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 NBPF6Q5VWK0 638 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 TEX2Q8IWB9 1127 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 CNKSR2Q8WXI2 1034 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 NBPF4Q96M43 638 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 GOLPH3LQ9H4A5 285 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 SUDS3Q9H7L9 328 aaPredicted RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 NEURL1BA8MQ27 555 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 TMEM232C9JQI7 657 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 POLE2P56282 527 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 VSNL1P62760 191 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 RNASELQ05823 741 aaKnown RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 ZMYM1Q5SVZ6 1142 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 PARP9Q8IXQ6 854 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 CCDC13Q8IYE1 715 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 MRRFQ96E11 262 aaKnown RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 CNOT6LQ96LI5 555 aaKnown RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 SYNCQ9H7C4 482 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 BCAP29Q9UHQ4 241 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 MRPL12P52815 198 aaKnown RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 SH3GL3Q99963 347 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 TARSL2A2RTX5 802 aaKnown RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 PGRMC1O00264 195 aaKnown RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 ELF1P32519 619 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 IL9RQ01113 521 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 PTGDRQ13258 359 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 HAUS3Q68CZ6 603 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 U2AF1L4Q8WU68 220 aaKnown RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 LRRC59Q96AG4 307 aaKnown RBP19.42■□□□□ 0.7
SMPD4-202ENST00000409031 MYOM2P54296 1465 aa19.42■□□□□ 0.7
SMPD4-202ENST00000409031 TTC37Q6PGP7 1564 aa19.41■□□□□ 0.7
SMPD4-202ENST00000409031 DHX9Q08211 1270 aaKnown RBP19.41■□□□□ 0.7
SMPD4-202ENST00000409031 CUL1Q13616 776 aa19.41■□□□□ 0.7
SMPD4-202ENST00000409031 NHEJ1Q9H9Q4 299 aaPredicted RBP19.41■□□□□ 0.7
SMPD4-202ENST00000409031 MAGEF1Q9HAY2 307 aa19.41■□□□□ 0.7
SMPD4-202ENST00000409031 TYW1Q9NV66 732 aaKnown RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms