RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 KRT79Q5XKE5 535 aa5.53□□□□□ -1.52
SMAD4-202ENST00000398417 CC2D1AQ6P1N0 951 aaPredicted RBP5.53□□□□□ -1.52
SMAD4-202ENST00000398417 SRGAP1Q7Z6B7 1085 aa5.53□□□□□ -1.52
SMAD4-202ENST00000398417 MARCH10Q8NA82 808 aaPredicted RBP5.53□□□□□ -1.52
SMAD4-202ENST00000398417 GSDMAQ96QA5 445 aa5.53□□□□□ -1.52
SMAD4-202ENST00000398417 RTCBQ9Y3I0 505 aaKnown RBP5.53□□□□□ -1.52
SMAD4-202ENST00000398417 CALML3P27482 149 aa5.53□□□□□ -1.52
SMAD4-202ENST00000398417 SSR1P43307 286 aaKnown RBP5.53□□□□□ -1.52
SMAD4-202ENST00000398417 ZNF658Q5TYW1 1059 aaPredicted RBP5.53□□□□□ -1.52
SMAD4-202ENST00000398417 BTN2A1Q7KYR7 527 aa5.53□□□□□ -1.52
SMAD4-202ENST00000398417 TICAM2Q86XR7 235 aa5.53□□□□□ -1.52
SMAD4-202ENST00000398417 RGS22Q8NE09 1264 aa5.53□□□□□ -1.52
SMAD4-202ENST00000398417 NYXQ9GZU5 481 aa5.53□□□□□ -1.52
SMAD4-202ENST00000398417 ARFGAP3Q9NP61 516 aa5.53□□□□□ -1.52
SMAD4-202ENST00000398417 AMPD3Q01432 767 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 UBE2SQ16763 222 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 SV2BQ7L1I2 683 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 KRT25Q7Z3Z0 450 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 CDCA7Q9BWT1 371 aaPredicted RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 CDC23Q9UJX2 597 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 TFR2Q9UP52 801 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 CLTCQ00610 1675 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 CCNT1O60563 726 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 USO1O60763 962 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 FXR1P51114 621 aaKnown RBP eCLIP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 SNAP25P60880 206 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 MDM2Q00987 491 aaPredicted RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 PPP2R5BQ15173 497 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 SNX29Q8TEQ0 813 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 PPP1R3GB7ZBB8 358 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 PLS1Q14651 629 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 SMC1AQ14683 1233 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 SEC23AQ15436 765 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 VGLL2Q8N8G2 317 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 LINC00116Q8NCU8 138 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 RUFY1Q96T51 708 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 PSMB7Q99436 277 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.52□□□□□ -1.533e-9■■■■■ 48.4
SMAD4-202ENST00000398417 BMP2KQ9NSY1 1161 aaPredicted RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 INTS13Q9NVM9 706 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 BSDC1Q9NW68 430 aaPredicted RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 CTAGE9A4FU28 777 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 ZMYND10O75800 440 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 SLC16A2P36021 539 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 LONRF2Q1L5Z9 754 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 TXNRD3Q86VQ6 643 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 FAM114A1Q8IWE2 563 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 TRIM10Q9UDY6 481 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 RSPH14Q9UHP6 348 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 ZNF804BA4D1E1 1349 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 WNT7AO00755 349 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 SRGAP2O75044 1071 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 RNASE9P60153 205 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 KRT83P78385 493 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 ARID5AQ03989 594 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 TRAPPC3LQ5T215 181 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 TRMT1LQ7Z2T5 733 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 LRRC47Q8N1G4 583 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 GPR161Q8N6U8 529 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 SMCR8Q8TEV9 937 aaPredicted RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 TAF4BQ92750 862 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 DPF3Q92784 378 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 TMEM60Q9H2L4 133 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 PNMA6AP0CW24 399 aaPredicted RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 TRIM21P19474 475 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 RDXP35241 583 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 ZNF76P36508 570 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 EPS15P42566 896 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 TERF2Q15554 542 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 PFKFB3Q16875 520 aaPredicted RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 WHAMMP3Q1A5X7 153 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 ATP8A2Q9NTI2 1148 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 MAGEA1P43355 309 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 DOK7Q18PE1 504 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 TYW1BQ6NUM6 668 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 SECISBP2LQ93073 1101 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 CCDC51Q96ER9 411 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 CCDC42Q96M95 316 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 RIOK1Q9BRS2 568 aaKnown RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 FAM207AQ9NSI2 230 aaPredicted RBP5.52□□□□□ -1.53
SMAD4-202ENST00000398417 PARP3Q9Y6F1 533 aa5.52□□□□□ -1.53
SMAD4-202ENST00000398417 KLRF2D3W0D1 207 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 PRCPP42785 496 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 GTF2IP78347 998 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 CYP27A1Q02318 531 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 RAD51AP2Q09MP3 1159 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 DPP8Q6V1X1 898 aaPredicted RBP5.51□□□□□ -1.53
SMAD4-202ENST00000398417 NLRC4Q9NPP4 1024 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 CALCOCO1Q9P1Z2 691 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 LIMA1Q9UHB6 759 aaKnown RBP5.51□□□□□ -1.53
SMAD4-202ENST00000398417 TACC1O75410 805 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 LONP1P36776 959 aaKnown RBP5.51□□□□□ -1.53
SMAD4-202ENST00000398417 PLA2G4AP47712 749 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 ADCY7P51828 1080 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 USP17L2Q6R6M4 530 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 SND1Q7KZF4 910 aaKnown RBP eCLIP5.51□□□□□ -1.53
SMAD4-202ENST00000398417 HPS3Q969F9 1004 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 MYO6Q9UM54 1294 aa5.51□□□□□ -1.53
SMAD4-202ENST00000398417 BUB1O43683 1085 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms