RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 UIMC1Q96RL1 719 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 TECP42680 631 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 TFAP4Q01664 338 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 EHHADHQ08426 723 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 RPAINQ86UA6 219 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 MSANTD4Q8NCY6 345 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 MRPL44Q9H9J2 332 aaKnown RBP17.56■□□□□ 0.4
COL17A1-202ENST00000369733 MAST3O60307 1309 aa17.56■□□□□ 0.4
COL17A1-202ENST00000369733 FRMD3A2A2Y4 597 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 FMNL1O95466 1100 aaPredicted RBP17.55■□□□□ 0.4
COL17A1-202ENST00000369733 BCRP11274 1271 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 HMGB2P26583 209 aaKnown RBP17.55■□□□□ 0.4
COL17A1-202ENST00000369733 LONP1P36776 959 aaKnown RBP17.55■□□□□ 0.4
COL17A1-202ENST00000369733 POLA2Q14181 598 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 PPP2R5EQ16537 467 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.55■□□□□ 0.4
COL17A1-202ENST00000369733 VCX3BQ9H321 246 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 FAM170AA1A519 330 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 ABCB4P21439 1286 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 PROSER3Q2NL68 480 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 EEF2KMTQ96G04 330 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 FAM184BQ9ULE4 1060 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 NOL3O60936 208 aaKnown RBP17.55■□□□□ 0.4
COL17A1-202ENST00000369733 PSMC4P43686 418 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 BIRC3Q13489 604 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 MUM1Q2TAK8 710 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 VEZTQ9HBM0 779 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 SLC39A2Q9NP94 309 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 TBX22Q9Y458 520 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 SMCO2A6NFE2 343 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 CYP2E1P05181 493 aaPredicted RBP17.55■□□□□ 0.4
COL17A1-202ENST00000369733 SCG2P13521 617 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 EEF1GP26641 437 aaKnown RBP17.55■□□□□ 0.4
COL17A1-202ENST00000369733 E2F4Q16254 413 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 ARHGAP44Q17R89 818 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 WDR78Q5VTH9 848 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 EPB41L5Q9HCM4 733 aa17.55■□□□□ 0.4
COL17A1-202ENST00000369733 BIN2Q9UBW5 565 aaPredicted RBP17.55■□□□□ 0.4
COL17A1-202ENST00000369733 STAT1P42224 750 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 MAGEA9P43362 315 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 FAM169AQ9Y6X4 670 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 HEXIM1O94992 359 aaKnown RBP17.54■□□□□ 0.4
COL17A1-202ENST00000369733 PARP10Q53GL7 1025 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 TOGARAM2Q6ZUX3 1019 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 GLT8D2Q9H1C3 349 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 MYCT1Q8N699 235 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 MIPOL1Q8TD10 442 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 EXOC3O60645 756 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 TBC1D8O95759 1140 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 XRCC5P13010 732 aaKnown RBP17.54■□□□□ 0.4
COL17A1-202ENST00000369733 NT5C3AQ9H0P0 336 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 PKD2L1Q9P0L9 805 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 STK24Q9Y6E0 443 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 FNBP1Q96RU3 617 aa17.54■□□□□ 0.4
COL17A1-202ENST00000369733 NNTQ13423 1086 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 TOB2Q14106 344 aaPredicted RBP17.53■□□□□ 0.4
COL17A1-202ENST00000369733 CCDC197Q8NCU1 140 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 OSBPL5Q9H0X9 879 aaPredicted RBP17.53■□□□□ 0.4
COL17A1-202ENST00000369733 GAS8O95995 478 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 OR52Z1P0C646 297 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 SLFN14P0C7P3 912 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 ANKRD20A3Q5VUR7 823 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 UHMK1Q8TAS1 419 aaKnown RBP17.53■□□□□ 0.4
COL17A1-202ENST00000369733 GOLPH3LQ9H4A5 285 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 HSPA1LP34931 641 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 KCNF1Q9H3M0 494 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 CCDC169A6NNP5 214 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 RPSAP08865 295 aaKnown RBP17.53■□□□□ 0.4
COL17A1-202ENST00000369733 TCIRG1Q13488 830 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 MAIP1Q8WWC4 291 aa17.53■□□□□ 0.4
COL17A1-202ENST00000369733 E2F5Q15329 346 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 ADAT2Q7Z6V5 191 aaKnown RBP17.52■□□□□ 0.4
COL17A1-202ENST00000369733 RETREG2Q8NC44 543 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 JPH2Q9BR39 696 aaPredicted RBP17.52■□□□□ 0.4
COL17A1-202ENST00000369733 VPS37BQ9H9H4 285 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 USTQ9Y2C2 406 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 PCDHB13Q9Y5F0 798 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 NDUFA10O95299 355 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 LRCH2Q5VUJ6 765 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 PHLDB2Q86SQ0 1253 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 USP17L12C9JPN9 530 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 USP17L21D6R901 530 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 PEX19P40855 299 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 SDR42E1Q8WUS8 393 aa17.52■□□□□ 0.4
COL17A1-202ENST00000369733 CPSF1Q10570 1443 aaKnown RBP17.52■□□□□ 0.39
COL17A1-202ENST00000369733 ARHGEF35A5YM69 484 aa17.52■□□□□ 0.39
COL17A1-202ENST00000369733 SEPT6Q14141 434 aa17.52■□□□□ 0.39
COL17A1-202ENST00000369733 ZNF658Q5TYW1 1059 aaPredicted RBP17.52■□□□□ 0.39
COL17A1-202ENST00000369733 GPKOWQ92917 476 aaPredicted RBP eCLIP17.52■□□□□ 0.39
COL17A1-202ENST00000369733 ZNF622Q969S3 477 aaKnown RBP eCLIP17.52■□□□□ 0.39
COL17A1-202ENST00000369733 GPBP1Q86WP2 473 aa17.51■□□□□ 0.39
COL17A1-202ENST00000369733 CCDC13Q8IYE1 715 aa17.51■□□□□ 0.39
COL17A1-202ENST00000369733 GBP5Q96PP8 586 aa17.51■□□□□ 0.39
COL17A1-202ENST00000369733 GPR108Q9NPR9 543 aa17.51■□□□□ 0.39
COL17A1-202ENST00000369733 CFAP65Q6ZU64 1925 aaKnown RBP17.51■□□□□ 0.39
COL17A1-202ENST00000369733 CTSWP56202 376 aa17.51■□□□□ 0.39
COL17A1-202ENST00000369733 UBE3CQ15386 1083 aa17.51■□□□□ 0.39
COL17A1-202ENST00000369733 RWDD2AQ9UIY3 292 aa17.51■□□□□ 0.39
COL17A1-202ENST00000369733 ATP7BP35670 1465 aa17.51■□□□□ 0.39
COL17A1-202ENST00000369733 KDM3AQ9Y4C1 1321 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms