RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 SLFN13Q68D06 897 aa21.05■□□□□ 0.96
HDDC3-201ENST00000330334 PLEKHM2Q8IWE5 1019 aa21.05■□□□□ 0.96
HDDC3-201ENST00000330334 GMCL1Q96IK5 515 aa21.05■□□□□ 0.96
HDDC3-201ENST00000330334 FAM227BQ96M60 508 aa21.05■□□□□ 0.96
HDDC3-201ENST00000330334 SLC38A10Q9HBR0 1119 aa21.05■□□□□ 0.96
HDDC3-201ENST00000330334 ZMYM6O95789 1325 aa21.04■□□□□ 0.96
HDDC3-201ENST00000330334 A0A0D9SFI3 127 aa21.04■□□□□ 0.96
HDDC3-201ENST00000330334 PLA2G6O60733 806 aa21.04■□□□□ 0.96
HDDC3-201ENST00000330334 FGAP02671 866 aa21.04■□□□□ 0.96
HDDC3-201ENST00000330334 BMP3P12645 472 aa21.04■□□□□ 0.96
HDDC3-201ENST00000330334 B4GALNT3Q6L9W6 998 aa21.04■□□□□ 0.96
HDDC3-201ENST00000330334 LRRC47Q8N1G4 583 aaKnown RBP21.04■□□□□ 0.96
HDDC3-201ENST00000330334 MSL3Q8N5Y2 521 aaKnown RBP21.04■□□□□ 0.96
HDDC3-201ENST00000330334 ARRDC4Q8NCT1 418 aa21.04■□□□□ 0.96
HDDC3-201ENST00000330334 IL17RBQ9NRM6 502 aa21.04■□□□□ 0.96
HDDC3-201ENST00000330334 DNAH12Q6ZR08 3092 aa21.03■□□□□ 0.96
HDDC3-201ENST00000330334 TSPY2A6NKD2 308 aa21.03■□□□□ 0.96
HDDC3-201ENST00000330334 TRIM6-TRIM34B2RNG4 842 aa21.03■□□□□ 0.96
HDDC3-201ENST00000330334 HSPD1P10809 573 aaKnown RBP21.03■□□□□ 0.96
HDDC3-201ENST00000330334 BMP8BP34820 402 aa21.03■□□□□ 0.96
HDDC3-201ENST00000330334 CTDSPL2Q05D32 466 aa21.03■□□□□ 0.96
HDDC3-201ENST00000330334 SNRNP48Q6IEG0 339 aaKnown RBP21.03■□□□□ 0.96
HDDC3-201ENST00000330334 C7orf61Q8IZ16 206 aa21.03■□□□□ 0.96
HDDC3-201ENST00000330334 CHURC1Q8WUH1 139 aa21.03■□□□□ 0.96
HDDC3-201ENST00000330334 TINF2Q9BSI4 451 aa21.03■□□□□ 0.96
HDDC3-201ENST00000330334 PGK2P07205 417 aa21.02■□□□□ 0.96
HDDC3-201ENST00000330334 FAM160B2Q86V87 743 aa21.02■□□□□ 0.96
HDDC3-201ENST00000330334 KIFC2Q96AC6 838 aa21.02■□□□□ 0.96
HDDC3-201ENST00000330334 GDF15Q99988 308 aa21.02■□□□□ 0.96
HDDC3-201ENST00000330334 INCENPQ9NQS7 918 aa21.02■□□□□ 0.96
HDDC3-201ENST00000330334 FBXO40Q9UH90 709 aa21.02■□□□□ 0.96
HDDC3-201ENST00000330334 RIPK3Q9Y572 518 aa21.02■□□□□ 0.96
HDDC3-201ENST00000330334 CTDP1Q9Y5B0 961 aaPredicted RBP21.02■□□□□ 0.96
HDDC3-201ENST00000330334 COL11A1P12107 1806 aaPredicted RBP21.01■□□□□ 0.95
HDDC3-201ENST00000330334 DNAJC25-GNG10A0A024R161 153 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 PCP11498 1178 aaKnown RBP21.01■□□□□ 0.95
HDDC3-201ENST00000330334 SDSP20132 328 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 SLC1A4P43007 532 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 STAT2P52630 851 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 MFAP1P55081 439 aaKnown RBP21.01■□□□□ 0.95
HDDC3-201ENST00000330334 NMIQ13287 307 aaPredicted RBP21.01■□□□□ 0.95
HDDC3-201ENST00000330334 CHST13Q8NET6 341 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 STAG1Q8WVM7 1258 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 RILPL2Q969X0 211 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 TCP11L1Q9NUJ3 509 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 STX8Q9UNK0 236 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 TACC3Q9Y6A5 838 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 CCDC171Q6TFL3 1326 aa21.01■□□□□ 0.95
HDDC3-201ENST00000330334 ALPK3Q96L96 1907 aa21■□□□□ 0.95
HDDC3-201ENST00000330334 RANBP6O60518 1105 aaKnown RBP21■□□□□ 0.95
HDDC3-201ENST00000330334 LRRC26Q2I0M4 334 aa21■□□□□ 0.95
HDDC3-201ENST00000330334 PRAMEF19Q5SWL8 479 aa21■□□□□ 0.95
HDDC3-201ENST00000330334 RCSD1Q6JBY9 416 aa21■□□□□ 0.95
HDDC3-201ENST00000330334 MAMDC4Q6UXC1 1216 aa21■□□□□ 0.95
HDDC3-201ENST00000330334 ZNF467Q7Z7K2 595 aaPredicted RBP21■□□□□ 0.95
HDDC3-201ENST00000330334 ZNF589Q86UQ0 364 aaPredicted RBP21■□□□□ 0.95
HDDC3-201ENST00000330334 CPXCR1Q8N123 301 aa21■□□□□ 0.95
HDDC3-201ENST00000330334 SENP6Q9GZR1 1112 aaPredicted RBP21■□□□□ 0.95
HDDC3-201ENST00000330334 MYH4Q9Y623 1939 aa21■□□□□ 0.95
HDDC3-201ENST00000330334 TMEM232C9JQI7 657 aa20.99■□□□□ 0.95
HDDC3-201ENST00000330334 MCCP23508 829 aa20.99■□□□□ 0.95
HDDC3-201ENST00000330334 DDX11Q96FC9 970 aa20.99■□□□□ 0.95
HDDC3-201ENST00000330334 RAVER2Q9HCJ3 691 aaKnown RBP20.99■□□□□ 0.95
HDDC3-201ENST00000330334 ZNFX1Q9P2E3 1918 aaKnown RBP20.99■□□□□ 0.95
HDDC3-201ENST00000330334 SYNGAP1Q96PV0 1343 aa20.99■□□□□ 0.95
HDDC3-201ENST00000330334 NMT2O60551 498 aa20.98■□□□□ 0.95
HDDC3-201ENST00000330334 NT5C2P49902 561 aa20.98■□□□□ 0.95
HDDC3-201ENST00000330334 ZMYND8Q9ULU4 1186 aaPredicted RBP20.98■□□□□ 0.95
HDDC3-201ENST00000330334 SUPT16HQ9Y5B9 1047 aaKnown RBP20.98■□□□□ 0.95
HDDC3-201ENST00000330334 LAMA3Q16787 3333 aa20.98■□□□□ 0.95
HDDC3-201ENST00000330334 SZT2Q5T011 3432 aa20.97■□□□□ 0.95
HDDC3-201ENST00000330334 HIP1O00291 1037 aa20.97■□□□□ 0.95
HDDC3-201ENST00000330334 ZNF865P0CJ78 1059 aaPredicted RBP20.97■□□□□ 0.95
HDDC3-201ENST00000330334 TKFCQ3LXA3 575 aa20.97■□□□□ 0.95
HDDC3-201ENST00000330334 CNPY2Q9Y2B0 182 aa20.97■□□□□ 0.95
HDDC3-201ENST00000330334 KBTBD13C9JR72 458 aa20.96■□□□□ 0.95
HDDC3-201ENST00000330334 RARBP10826 455 aa20.96■□□□□ 0.95
HDDC3-201ENST00000330334 LRRC41Q15345 812 aa20.96■□□□□ 0.95
HDDC3-201ENST00000330334 AKNAD1Q5T1N1 836 aa20.96■□□□□ 0.95
HDDC3-201ENST00000330334 GJC2Q5T442 439 aaPredicted RBP20.96■□□□□ 0.95
HDDC3-201ENST00000330334 ANKRD35Q8N283 1001 aa20.96■□□□□ 0.95
HDDC3-201ENST00000330334 DCAF4Q8WV16 495 aa20.96■□□□□ 0.95
HDDC3-201ENST00000330334 TTC14Q96N46 770 aa20.96■□□□□ 0.95
HDDC3-201ENST00000330334 FRMPD3Q5JV73 1810 aa20.96■□□□□ 0.95
HDDC3-201ENST00000330334 ZNF536O15090 1300 aa20.96■□□□□ 0.95
HDDC3-201ENST00000330334 TOP1P11387 765 aaKnown RBP20.95■□□□□ 0.94
HDDC3-201ENST00000330334 AKR1A1P14550 325 aa20.95■□□□□ 0.94
HDDC3-201ENST00000330334 C1orf53Q5VUE5 145 aa20.95■□□□□ 0.94
HDDC3-201ENST00000330334 ANO1Q5XXA6 986 aa20.95■□□□□ 0.94
HDDC3-201ENST00000330334 MFSD6Q6ZSS7 791 aa20.95■□□□□ 0.94
HDDC3-201ENST00000330334 RNF41Q9H4P4 317 aaPredicted RBP20.95■□□□□ 0.94
HDDC3-201ENST00000330334 SNAI1O95863 264 aaPredicted RBP20.94■□□□□ 0.94
HDDC3-201ENST00000330334 TAL1P17542 331 aaPredicted RBP20.94■□□□□ 0.94
HDDC3-201ENST00000330334 SYN1P17600 705 aa20.94■□□□□ 0.94
HDDC3-201ENST00000330334 MAGEA10P43363 369 aaPredicted RBP20.94■□□□□ 0.94
HDDC3-201ENST00000330334 IKQ13123 557 aaPredicted RBP20.94■□□□□ 0.94
HDDC3-201ENST00000330334 SNX17Q15036 470 aa20.94■□□□□ 0.94
HDDC3-201ENST00000330334 BTNL9Q6UXG8 535 aa20.94■□□□□ 0.94
HDDC3-201ENST00000330334 SLC39A5Q6ZMH5 540 aa20.94■□□□□ 0.94
HDDC3-201ENST00000330334 KCTD1Q719H9 257 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms