RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 SNRNP200O75643 2136 aaKnown RBP12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 SND1Q7KZF4 910 aaKnown RBP eCLIP12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 DHX58Q96C10 678 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 SEPT3Q9UH03 358 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 TSPOAP1O95153 1857 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 STX18Q9P2W9 335 aaKnown RBP12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 ZNF500O60304 480 aaPredicted RBP12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 TNNC2P02585 160 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 STX17P56962 302 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 CBX8Q9HC52 389 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 SCN1AP35498 2009 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 GRAMD1BQ3KR37 738 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 GNPTABQ3T906 1256 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 NOP53Q9NZM5 478 aaKnown RBP12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 ARHGEF17Q96PE2 2063 aaPredicted RBP12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 ZNF445P59923 1031 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 KLHL29Q96CT2 875 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 HOOK2Q96ED9 719 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 TBC1D23Q9NUY8 699 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 CHPF2Q9P2E5 772 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 ZNF652Q9Y2D9 606 aa12.21□□□□□ -0.45
HDGFL3-201ENST00000299633 PRAG1Q86YV5 1406 aa12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 MSH6P52701 1360 aa12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 IL16Q14005 1332 aa12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 PDE4BQ07343 736 aa12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 TEX11Q8IYF3 940 aa12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 ENOX1Q8TC92 643 aaKnown RBP12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 ATP5J2-PTCD1G3V325 749 aa12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 FBLN1P23142 703 aa12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 Q6ZUG5 572 aa12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 TEX2Q8IWB9 1127 aa12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 VAT1LQ9HCJ6 419 aa12.21□□□□□ -0.46
HDGFL3-201ENST00000299633 TSPY2A6NKD2 308 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 TSPY3P0CV98 308 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 TSPY8P0CW00 308 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 GRK2P25098 689 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 TSPY1Q01534 308 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 KSR1Q8IVT5 923 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 KCNH5Q8NCM2 988 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 DCDC2Q9UHG0 476 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 TRPC5Q9UL62 973 aaPredicted RBP12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 ABCC1P33527 1531 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 ORC4O43929 436 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 YIPF3Q9GZM5 350 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 ZPR1O75312 459 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 PYGMP11217 842 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 CEP85Q6P2H3 762 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 NCOA7Q8NI08 942 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 PARD3Q8TEW0 1356 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 SPAG7O75391 227 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 OCM2P0CE71 109 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 OCMP0CE72 109 aaPredicted RBP12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 ESYT1Q9BSJ8 1104 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 ARID1AO14497 2285 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 DOCK10Q96BY6 2186 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 PDCLQ13371 301 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 NUP58Q9BVL2 599 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 WARS2Q9UGM6 360 aaKnown RBP12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 TTLL3Q9Y4R7 772 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 ATAD3BQ5T9A4 648 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 TRAIPQ9BWF2 469 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 IMPACTQ9P2X3 320 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 CHGBP05060 677 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 OR9Q1Q8NGQ5 310 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 UPF3AQ9H1J1 476 aaKnown RBP12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 RP1L1Q8IWN7 2480 aaPredicted RBP12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 DNAJC6O75061 913 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 PEX26Q7Z412 305 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 PI4KAP2A4QPH2 592 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 RTN1Q16799 776 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 PI4KAP1Q8N8J0 262 aa12.2□□□□□ -0.46
HDGFL3-201ENST00000299633 ATG16L1Q676U5 607 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 RNF34Q969K3 372 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 DTNBO60941 627 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 TUBGCP3Q96CW5 907 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 MEIS3Q99687 375 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 TRMT112Q9UI30 125 aaKnown RBP12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 FANCAO15360 1455 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 RASSF10A6NK89 507 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 GARSP41250 739 aaKnown RBP12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 SKA2Q8WVK7 121 aaPredicted RBP12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 CHCHD3Q9NX63 227 aaKnown RBP12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 HYOU1Q9Y4L1 999 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 SYNRGQ9UMZ2 1314 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 GNAT2P19087 354 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 TRIM63Q969Q1 353 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 SLC13A4Q9UKG4 626 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 MAP3K10Q02779 954 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 LRMPQ12912 555 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 FBXL13Q8NEE6 735 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 ACTR5Q9H9F9 607 aaPredicted RBP12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 CALM1P0DP23 149 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 CALM2P0DP24 149 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 CALM3P0DP25 149 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 ECE1P42892 770 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 OLA1Q9NTK5 396 aaKnown RBP12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 PSMB7Q99436 277 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 PDE1AP54750 535 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 AKNAD1Q5T1N1 836 aa12.19□□□□□ -0.46
HDGFL3-201ENST00000299633 GOLGA8RI6L899 631 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms