RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 PDE6BP35913 854 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 CACNB1Q02641 598 aaPredicted RBP10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 ARHGEF1Q92888 912 aaKnown RBP10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 COA7Q96BR5 231 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 GBP3Q9H0R5 595 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 MRPL12P52815 198 aaKnown RBP10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 STAG1Q8WVM7 1258 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 PSMB7Q99436 277 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 FOXP1Q9H334 677 aaPredicted RBP10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 RCOR1Q9UKL0 485 aa10.01□□□□□ -0.81
PDLIM5-222ENST00000615540 MST1RQ04912 1400 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 LMAN1P49257 510 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 EVCP57679 992 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 GRM1Q13255 1194 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 ITPK1Q13572 414 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 GRAPQ13588 217 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 UBE2SQ16763 222 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 SLC44A5Q8NCS7 719 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 GRAPLQ8TC17 118 aaPredicted RBP10□□□□□ -0.81
PDLIM5-222ENST00000615540 SLC39A2Q9NP94 309 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 PIK3C2AO00443 1686 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 H0YHG0 523 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 CACNB3P54284 484 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 GPSM2P81274 684 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 PPARDQ03181 441 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 MAPK8IP2Q13387 824 aaPredicted RBP10□□□□□ -0.81
PDLIM5-222ENST00000615540 MAP9Q49MG5 647 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 PRR16Q569H4 304 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 DDX25Q9UHL0 483 aaKnown RBP10□□□□□ -0.81
PDLIM5-222ENST00000615540 PCDHA5Q9Y5H7 936 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 A0A1W2PQ27 194 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 A0A1W2PQ64 194 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 A0A1W2PQD8 194 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 DDIT3P35638 169 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 GJC1P36383 396 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 BMS1Q14692 1282 aaKnown RBP10□□□□□ -0.81
PDLIM5-222ENST00000615540 STXBP4Q6ZWJ1 553 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 CCDC65Q8IXS2 484 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 CPXCR1Q8N123 301 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 JDP2Q8WYK2 163 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 FAM212AQ96EL1 285 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 TSPYL1Q9H0U9 437 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 GSG1L2A8MUP6 293 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 PPP2R5BQ15173 497 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 MAATS1Q7Z4T9 603 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 TBC1D5Q92609 795 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 ARHGEF10LQ9HCE6 1279 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 UBN2Q6ZU65 1347 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 KRT83P78385 493 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 JAKMIP2Q96AA8 810 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 PPP1R13BQ96KQ4 1090 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 LZTS2Q9BRK4 669 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 BCL2L12Q9HB09 334 aa10□□□□□ -0.81
PDLIM5-222ENST00000615540 POTEB2H3BUK9 544 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 SPECC1LQ69YQ0 1117 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 CEP112Q8N8E3 955 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 TBC1D22AQ8WUA7 517 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 FAM207AQ9NSI2 230 aaPredicted RBP9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 ATP8A2Q9NTI2 1148 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 OVOS2A0A0G2JMS6 1433 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 RGPD8O14715 1765 aaPredicted RBP9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 KIF5AQ12840 1032 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 EHBP1Q8NDI1 1231 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 PSTPIP2Q9H939 334 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 SAMSN1Q9NSI8 373 aaKnown RBP9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 PTPROQ16827 1216 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 CERKLQ49MI3 558 aaPredicted RBP9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 TYW1BQ6NUM6 668 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 DHX40Q8IX18 779 aaKnown RBP9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 KRT222Q8N1A0 295 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 LEMD3Q9Y2U8 911 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 KRT13P13646 458 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 KLRK1P26718 216 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 EXOSC10Q01780 885 aaKnown RBP9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 TRPC5Q9UL62 973 aaPredicted RBP9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 AKAP12Q02952 1782 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 NCOA3Q9Y6Q9 1424 aa9.99□□□□□ -0.81
PDLIM5-222ENST00000615540 FOXN1O15353 648 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 OR52Z1P0C646 297 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 ATP1A3P13637 1013 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 RBL2Q08999 1139 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 MARCH10Q8NA82 808 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 CACTINQ8WUQ7 758 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 SCAF8Q9UPN6 1271 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 KRT86O43790 486 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 TACC1O75410 805 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 CAMTA2O94983 1202 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 GCNT3O95395 438 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 TPH2Q8IWU9 490 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 ENAHQ8N8S7 591 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 RNF26Q9BY78 433 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 SPATA31A1Q5TZJ5 1347 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 FMN2Q9NZ56 1722 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 SEMA3EO15041 775 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 CDC25BP30305 580 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 RESP18Q5W5W9 173 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 KRT27Q7Z3Y8 459 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 NEK8Q86SG6 692 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 SALL3Q9BXA9 1300 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 RFX7Q2KHR2 1363 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms