RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 TNKSO95271 1327 aa23.11■■□□□ 1.29
SHKBP1-214ENST00000597396 SPDYE16A6NNV3 312 aaPredicted RBP23.11■■□□□ 1.29
SHKBP1-214ENST00000597396 PKN2Q16513 984 aaKnown RBP23.11■■□□□ 1.29
SHKBP1-214ENST00000597396 RCSD1Q6JBY9 416 aa23.11■■□□□ 1.29
SHKBP1-214ENST00000597396 DGKHQ86XP1 1220 aa23.11■■□□□ 1.29
SHKBP1-214ENST00000597396 CHMP4CQ96CF2 233 aa23.11■■□□□ 1.29
SHKBP1-214ENST00000597396 HPS5Q9UPZ3 1129 aa23.11■■□□□ 1.29
SHKBP1-214ENST00000597396 BMP3P12645 472 aa23.1■■□□□ 1.29
SHKBP1-214ENST00000597396 ZKSCAN1P17029 563 aaPredicted RBP23.1■■□□□ 1.29
SHKBP1-214ENST00000597396 DSG3P32926 999 aa23.1■■□□□ 1.29
SHKBP1-214ENST00000597396 SLC1A4P43007 532 aa23.1■■□□□ 1.29
SHKBP1-214ENST00000597396 MORF4L1Q9UBU8 362 aa23.1■■□□□ 1.29
SHKBP1-214ENST00000597396 MYPNQ86TC9 1320 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 ERICH2A1L162 156 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 MCCP23508 829 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 SART3Q15020 963 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 LBX2Q6XYB7 198 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 MB21D2Q8IYB1 491 aaPredicted RBP23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 ENAHQ8N8S7 591 aaPredicted RBP23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 GMCL1Q96IK5 515 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 KAT14Q9H8E8 782 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 EFCC1Q9HA90 598 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 FBXO28Q9NVF7 368 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 RBPJLQ9UBG7 517 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 RABGAP1Q9Y3P9 1069 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 TRIM17Q9Y577 477 aa23.09■■□□□ 1.29
SHKBP1-214ENST00000597396 IFIT3O14879 490 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 FMNL1O95466 1100 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 PSMC4P43686 418 aa23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 ERVK-9P63128 1117 aa23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 ERVK-24P63145 666 aa23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 CCDC96Q2M329 555 aa23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 IFIT1BQ5T764 474 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 GPRC5AQ8NFJ5 357 aa23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 DCAF4Q8WV16 495 aa23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 ATG4CQ96DT6 458 aa23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 SLF1Q9BQI6 1058 aa23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 ARHGAP39Q9C0H5 1083 aa23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 TXNRD2Q9NNW7 524 aa23.08■■□□□ 1.29
SHKBP1-214ENST00000597396 EPB41L2O43491 1005 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 PEX10O60683 326 aa23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 FCGRTP55899 365 aa23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 IKQ13123 557 aaPredicted RBP23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 KRT32Q14532 448 aa23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 CHST3Q7LGC8 479 aa23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 CCAR1Q8IX12 1150 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 PNMA1Q8ND90 353 aa23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 ANKS1AQ92625 1134 aa23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 FEM1BQ9UK73 627 aa23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 PPP1R9AQ9ULJ8 1098 aa23.07■■□□□ 1.28
SHKBP1-214ENST00000597396 TMEM232C9JQI7 657 aa23.06■■□□□ 1.28
SHKBP1-214ENST00000597396 MCM5P33992 734 aa23.06■■□□□ 1.28
SHKBP1-214ENST00000597396 HSPA4P34932 840 aa23.06■■□□□ 1.28
SHKBP1-214ENST00000597396 KCTD1Q719H9 257 aa23.06■■□□□ 1.28
SHKBP1-214ENST00000597396 RASGRP2Q7LDG7 609 aa23.06■■□□□ 1.28
SHKBP1-214ENST00000597396 OTOP1Q7RTM1 612 aa23.06■■□□□ 1.28
SHKBP1-214ENST00000597396 MB21D1Q8N884 522 aa23.06■■□□□ 1.28
SHKBP1-214ENST00000597396 EIF5BO60841 1220 aaKnown RBP23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 CNMDO75829 334 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 STAT2P52630 851 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 CCNA1P78396 465 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 CAP1Q01518 475 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 WTAPQ15007 396 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 SEC23AQ15436 765 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 TSGA10IPQ3SY00 556 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 TMEM67Q5HYA8 995 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 POTEEQ6S8J3 1075 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 FAM160B2Q86V87 743 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 RASEFQ8IZ41 740 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 PRPF38AQ8NAV1 312 aaKnown RBP23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 CHURC1Q8WUH1 139 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 KIFC2Q96AC6 838 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 TRIM47Q96LD4 638 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 NEK1Q96PY6 1258 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 BTBD7Q9P203 1132 aa23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 CTDP1Q9Y5B0 961 aaPredicted RBP23.05■■□□□ 1.28
SHKBP1-214ENST00000597396 PLXNB2O15031 1838 aa23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 TNPO2O14787 897 aaKnown RBP23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 PRC1O43663 620 aa23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 GNRH1P01148 92 aa23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 PDHBP11177 359 aa23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 HOXD10P28358 340 aa23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 CTGFP29279 349 aa23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 ANTXR2P58335 489 aa23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 PLS1Q14651 629 aa23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 Q3C1V9 767 aa23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 FBXO46Q6PJ61 603 aaPredicted RBP23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 CWC22Q9HCG8 908 aaKnown RBP23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 MYH6P13533 1939 aa23.04■■□□□ 1.28
SHKBP1-214ENST00000597396 COA7Q96BR5 231 aa23.03■■□□□ 1.28
SHKBP1-214ENST00000597396 USP26Q9BXU7 913 aa23.03■■□□□ 1.28
SHKBP1-214ENST00000597396 FRMPD2Q68DX3 1309 aaPredicted RBP23.03■■□□□ 1.28
SHKBP1-214ENST00000597396 VWA5AO00534 786 aa23.02■■□□□ 1.28
SHKBP1-214ENST00000597396 WDR78Q5VTH9 848 aa23.02■■□□□ 1.28
SHKBP1-214ENST00000597396 KCNB2Q92953 911 aa23.02■■□□□ 1.28
SHKBP1-214ENST00000597396 TMEM87BQ96K49 555 aa23.02■■□□□ 1.28
SHKBP1-214ENST00000597396 MTA3Q9BTC8 594 aa23.02■■□□□ 1.28
SHKBP1-214ENST00000597396 SPATC1LQ9H0A9 340 aa23.02■■□□□ 1.28
SHKBP1-214ENST00000597396 GPCPD1Q9NPB8 672 aa23.02■■□□□ 1.28
SHKBP1-214ENST00000597396 ADAMTS5Q9UNA0 930 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms