RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TANGO6Q9C0B7 1094 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 EPB41L4AQ9HCS5 686 aaPredicted RBP8.1□□□□□ -1.11
VPS53-213ENST00000572334 SLC4A4Q9Y6R1 1079 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 MYO9BQ13459 2157 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 ROBO3Q96MS0 1386 aa8.1□□□□□ -1.11
VPS53-213ENST00000572334 VCANP13611 3396 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 IGKV6D-41A0A0C4DH26 115 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 DNM1LO00429 736 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 WDR46O15213 610 aaKnown RBP8.09□□□□□ -1.11
VPS53-213ENST00000572334 STRNO43815 780 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 FLOT1O75955 427 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 RASA1P20936 1047 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 MDM2Q00987 491 aaPredicted RBP8.09□□□□□ -1.11
VPS53-213ENST00000572334 SNX17Q15036 470 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 SBK1Q52WX2 424 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 GJC2Q5T442 439 aaPredicted RBP8.09□□□□□ -1.11
VPS53-213ENST00000572334 ANO1Q5XXA6 986 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 TSHZ3Q63HK5 1081 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 GPR153Q6NV75 609 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 Q7L0L9 218 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 TDHQ8IZJ6 230 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 MB21D1Q8N884 522 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 MAML3Q96JK9 1138 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 SENP6Q9GZR1 1112 aaPredicted RBP8.09□□□□□ -1.11
VPS53-213ENST00000572334 DCTPP1Q9H773 170 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 ARHGEF10LQ9HCE6 1279 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 ZNF214Q9UL59 606 aaPredicted RBP8.09□□□□□ -1.11
VPS53-213ENST00000572334 IVNS1ABPQ9Y6Y0 642 aa8.09□□□□□ -1.11
VPS53-213ENST00000572334 VWA5AO00534 786 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 SEPT4O43236 478 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 MSCO60682 206 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 TAL1P17542 331 aaPredicted RBP8.08□□□□□ -1.12
VPS53-213ENST00000572334 CNGA1P29973 690 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 ATN1P54259 1190 aaPredicted RBP8.08□□□□□ -1.12
VPS53-213ENST00000572334 ZNF792Q3KQV3 632 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 DPP9Q86TI2 863 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 RIOX2Q8IUF8 465 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 ABRAQ8N0Z2 381 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 KBTBD3Q8NAB2 608 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 NUP88Q99567 741 aaPredicted RBP8.08□□□□□ -1.12
VPS53-213ENST00000572334 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS53-213ENST00000572334 MROH8Q9H579 483 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 KANSL2Q9H9L4 492 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 CWC22Q9HCG8 908 aaKnown RBP8.08□□□□□ -1.12
VPS53-213ENST00000572334 ECHDC1Q9NTX5 307 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 PPP1R9AQ9ULJ8 1098 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 PRUNE2Q8WUY3 3088 aa8.08□□□□□ -1.12
VPS53-213ENST00000572334 SPTBN5Q9NRC6 3674 aaKnown RBP8.07□□□□□ -1.12
VPS53-213ENST00000572334 LRRC37A2A6NM11 1700 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 M0R2C6 588 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 FOXP2O15409 715 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 PGK2P07205 417 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 RTP1P59025 263 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 PLS1Q14651 629 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 LRRC41Q15345 812 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 FAM47AQ5JRC9 791 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 FAM83BQ5T0W9 1011 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 GIMAP6Q6P9H5 292 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 SLC39A5Q6ZMH5 540 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 NCAPG2Q86XI2 1143 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 PI4K2BQ8TCG2 481 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 OTUD7AQ8TE49 926 aaPredicted RBP8.07□□□□□ -1.12
VPS53-213ENST00000572334 APPBP2Q92624 585 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 SEC62Q99442 399 aaKnown RBP8.07□□□□□ -1.12
VPS53-213ENST00000572334 UBE2OQ9C0C9 1292 aaKnown RBP8.07□□□□□ -1.12
VPS53-213ENST00000572334 MTMR10Q9NXD2 777 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 ARPP21Q9UBL0 812 aaPredicted RBP8.07□□□□□ -1.12
VPS53-213ENST00000572334 RIPK3Q9Y572 518 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 PCDHB15Q9Y5E8 787 aa8.07□□□□□ -1.12
VPS53-213ENST00000572334 SALL3Q9BXA9 1300 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 DNAJC25-GNG10A0A024R161 153 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 POTEB2H3BUK9 544 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 RNF113AO15541 343 aaKnown RBP8.06□□□□□ -1.12
VPS53-213ENST00000572334 GPAA1O43292 621 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 SLC25A27O95847 323 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 NDUFB10O96000 172 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 ZNF865P0CJ78 1059 aaPredicted RBP8.06□□□□□ -1.12
VPS53-213ENST00000572334 FCER1AP12319 257 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 ITGB8P26012 769 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 STAT3P40763 770 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 C1orf53Q5VUE5 145 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 ZSCAN25Q6NSZ9 544 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 SAMD1Q6SPF0 538 aaPredicted RBP8.06□□□□□ -1.12
VPS53-213ENST00000572334 SH3RF1Q7Z6J0 888 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 STK11IPQ8N1F8 1099 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 DEFB123Q8N688 67 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 LENG1Q96BZ8 264 aaPredicted RBP8.06□□□□□ -1.12
VPS53-213ENST00000572334 FGD4Q96M96 766 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 MMP19Q99542 508 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 TINF2Q9BSI4 451 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 CHMP4BQ9H444 224 aaKnown RBP8.06□□□□□ -1.12
VPS53-213ENST00000572334 SH2D4AQ9H788 454 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 NYAP2Q9P242 653 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 DIS3Q9Y2L1 958 aaKnown RBP8.06□□□□□ -1.12
VPS53-213ENST00000572334 TACC3Q9Y6A5 838 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 PLIN4Q96Q06 1357 aa8.06□□□□□ -1.12
VPS53-213ENST00000572334 TRIM43BA6NCK2 446 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 MINDY4BA8MYZ0 360 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 F5H6K3 240 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 ATP2A1O14983 1001 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms