RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 OSBPP22059 807 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 USP14P54578 494 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 SNAP25P60880 206 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 IMMTQ16891 758 aaKnown RBP10.9□□□□□ -0.66
VPS35-206ENST00000565228 LBX2Q6XYB7 198 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 CTU1Q7Z7A3 348 aaKnown RBP10.9□□□□□ -0.66
VPS35-206ENST00000565228 ENAHQ8N8S7 591 aaPredicted RBP10.9□□□□□ -0.66
VPS35-206ENST00000565228 ANKS1AQ92625 1134 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 KCNB2Q92953 911 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 CPVLQ9H3G5 476 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 EFCC1Q9HA90 598 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 ANO2Q9NQ90 1003 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 TOMM22Q9NS69 142 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 TRIM17Q9Y577 477 aa10.9□□□□□ -0.66
VPS35-206ENST00000565228 A0A0C4DFX4 3053 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 BAZ2BQ9UIF8 2168 aaKnown RBP10.89□□□□□ -0.67
VPS35-206ENST00000565228 CCDC85CA6NKD9 419 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 WDR46O15213 610 aaKnown RBP10.89□□□□□ -0.67
VPS35-206ENST00000565228 SLC3A2P08195 630 aaKnown RBP10.89□□□□□ -0.67
VPS35-206ENST00000565228 CPA1P15085 419 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 MCCP23508 829 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 PSMC4P43686 418 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 IRX3P78415 501 aaPredicted RBP10.89□□□□□ -0.67
VPS35-206ENST00000565228 TMEM132BQ14DG7 1078 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 FAM110CQ1W6H9 321 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 SLFN13Q68D06 897 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 KCTD1Q719H9 257 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 GMCL1P1Q8NEA9 526 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 PAGR1Q9BTK6 254 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 CTNNA3Q9UI47 895 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 GJD2Q9UKL4 321 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 STX8Q9UNK0 236 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 PTPN22Q9Y2R2 807 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 RIPK3Q9Y572 518 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 PTCH2Q9Y6C5 1203 aa10.89□□□□□ -0.67
VPS35-206ENST00000565228 TNKSO95271 1327 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 LCTP09848 1927 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 MYCNP04198 464 aaPredicted RBP10.88□□□□□ -0.67
VPS35-206ENST00000565228 SNHG28P0DPA3 235 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 ERVK-9P63128 1117 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 ERVK-24P63145 666 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 PRKCZQ05513 592 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 COG2Q14746 738 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 IGDCC4Q8TDY8 1250 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 SMCR8Q8TEV9 937 aaPredicted RBP10.88□□□□□ -0.67
VPS35-206ENST00000565228 LPAR1Q92633 364 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 ESR2Q92731 530 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 TCEANC2Q96MN5 208 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 ZSCAN10Q96SZ4 725 aaPredicted RBP10.88□□□□□ -0.67
VPS35-206ENST00000565228 LRRC2Q9BYS8 371 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 TANGO6Q9C0B7 1094 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 ZNF287Q9HBT7 754 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 PNMA3Q9UL41 463 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 PPP1R9AQ9ULJ8 1098 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 MTMR7Q9Y216 660 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 SZT2Q5T011 3432 aa10.88□□□□□ -0.67
VPS35-206ENST00000565228 ZNF536O15090 1300 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 FRMPD2Q68DX3 1309 aaPredicted RBP10.87□□□□□ -0.67
VPS35-206ENST00000565228 RAD21O60216 631 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 ABCB7O75027 752 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 FLOT1O75955 427 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 GOLGA8HP0CJ92 632 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 PDHBP11177 359 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 TOP1P11387 765 aaKnown RBP10.87□□□□□ -0.67
VPS35-206ENST00000565228 PCP11498 1178 aaKnown RBP10.87□□□□□ -0.67
VPS35-206ENST00000565228 HSPA4P34932 840 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 SLC16A2P36021 539 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 USP6NLQ92738 828 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 ERO1AQ96HE7 468 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 MOV10L1Q9BXT6 1211 aaKnown RBP10.87□□□□□ -0.67
VPS35-206ENST00000565228 USP26Q9BXU7 913 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 RNF41Q9H4P4 317 aaPredicted RBP10.87□□□□□ -0.67
VPS35-206ENST00000565228 GOPCQ9HD26 462 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 ZNF214Q9UL59 606 aaPredicted RBP10.87□□□□□ -0.67
VPS35-206ENST00000565228 HPS5Q9UPZ3 1129 aa10.87□□□□□ -0.67
VPS35-206ENST00000565228 TMEM232C9JQI7 657 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 VWA5AO00534 786 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 BMP3P12645 472 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 GCLCP48506 637 aaPredicted RBP10.86□□□□□ -0.67
VPS35-206ENST00000565228 EXOSC10Q01780 885 aaKnown RBP10.86□□□□□ -0.67
VPS35-206ENST00000565228 TRIM32Q13049 653 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 PABPC4Q13310 644 aaKnown RBP eCLIP10.86□□□□□ -0.67
VPS35-206ENST00000565228 TSGA10IPQ3SY00 556 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 C8orf34Q49A92 452 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 MORN1Q5T089 497 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 NBPF11Q86T75 865 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 DGKHQ86XP1 1220 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 STAG2Q8N3U4 1231 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 GPRC5AQ8NFJ5 357 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 GMCL1Q96IK5 515 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 LY9Q9HBG7 655 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 FLRT1Q9NZU1 646 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 SRRDQ9UH36 339 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 SYNPO2Q9UMS6 1093 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 RABGAP1Q9Y3P9 1069 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 GTF3C3Q9Y5Q9 886 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 SNX14Q9Y5W7 946 aa10.86□□□□□ -0.67
VPS35-206ENST00000565228 KIAA0100Q14667 2235 aaKnown RBP10.85□□□□□ -0.67
VPS35-206ENST00000565228 SH2B2O14492 632 aaPredicted RBP10.85□□□□□ -0.67
VPS35-206ENST00000565228 IGHA2P01877 340 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms