RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 MBD4O95243 580 aa13.92□□□□□ -0.18
LDLR-212ENST00000560467 CNGA1P29973 690 aa13.92□□□□□ -0.18
LDLR-212ENST00000560467 CYP2C19P33261 490 aa13.92□□□□□ -0.18
LDLR-212ENST00000560467 GUCY1A2P33402 732 aa13.92□□□□□ -0.18
LDLR-212ENST00000560467 SHMT1P34896 483 aa13.92□□□□□ -0.18
LDLR-212ENST00000560467 ATN1P54259 1190 aaPredicted RBP13.92□□□□□ -0.18
LDLR-212ENST00000560467 USP14P54578 494 aa13.92□□□□□ -0.18
LDLR-212ENST00000560467 GRB14Q14449 540 aa13.92□□□□□ -0.18
LDLR-212ENST00000560467 KRT32Q14532 448 aa13.92□□□□□ -0.18
LDLR-212ENST00000560467 IMMTQ16891 758 aaKnown RBP13.92□□□□□ -0.18
LDLR-212ENST00000560467 CERKLQ49MI3 558 aaPredicted RBP13.92□□□□□ -0.18
LDLR-212ENST00000560467 MAP4K1Q92918 833 aa13.92□□□□□ -0.18
LDLR-212ENST00000560467 SEC62Q99442 399 aaKnown RBP13.92□□□□□ -0.18
LDLR-212ENST00000560467 PUS7LQ9H0K6 701 aaKnown RBP13.92□□□□□ -0.18
LDLR-212ENST00000560467 RPAP3Q9H6T3 665 aaPredicted RBP13.92□□□□□ -0.18
LDLR-212ENST00000560467 DDX20Q9UHI6 824 aaKnown RBP13.92□□□□□ -0.18
LDLR-212ENST00000560467 SLC4A4Q9Y6R1 1079 aa13.92□□□□□ -0.18
LDLR-212ENST00000560467 TCRBV5S4A2TA0A5A2 114 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 M0R2C6 588 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 HOXC6P09630 235 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 HSPD1P10809 573 aaKnown RBP13.91□□□□□ -0.18
LDLR-212ENST00000560467 PSMA5P28066 241 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 TDO2P48775 406 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 PLCD1P51178 756 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 ATP2B2Q01814 1243 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 LBX2Q6XYB7 198 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 CCDC129Q6ZRS4 1044 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 GUCD1Q96NT3 240 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 STRBPQ96SI9 672 aaKnown RBP13.91□□□□□ -0.18
LDLR-212ENST00000560467 LSG1Q9H089 658 aaKnown RBP13.91□□□□□ -0.18
LDLR-212ENST00000560467 NAPBQ9H115 298 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 IVNS1ABPQ9Y6Y0 642 aa13.91□□□□□ -0.18
LDLR-212ENST00000560467 ZNF213O14771 459 aa13.9□□□□□ -0.18
LDLR-212ENST00000560467 SLC3A2P08195 630 aaKnown RBP13.9□□□□□ -0.18
LDLR-212ENST00000560467 HSPA4P34932 840 aa13.9□□□□□ -0.18
LDLR-212ENST00000560467 RTP1P59025 263 aa13.9□□□□□ -0.18
LDLR-212ENST00000560467 BECN1Q14457 450 aa13.9□□□□□ -0.18
LDLR-212ENST00000560467 SEPT2Q15019 361 aa13.9□□□□□ -0.18
LDLR-212ENST00000560467 TTC6Q86TZ1 520 aa13.9□□□□□ -0.18
LDLR-212ENST00000560467 ZNF589Q86UQ0 364 aaPredicted RBP13.9□□□□□ -0.18
LDLR-212ENST00000560467 LPAR1Q92633 364 aa13.9□□□□□ -0.18
LDLR-212ENST00000560467 FAM161BQ96MY7 647 aa13.9□□□□□ -0.18
LDLR-212ENST00000560467 LBHD1Q9BQE6 289 aaPredicted RBP13.9□□□□□ -0.18
LDLR-212ENST00000560467 RIOK1Q9BRS2 568 aaKnown RBP13.9□□□□□ -0.18
LDLR-212ENST00000560467 ARMT1Q9H993 441 aa13.9□□□□□ -0.18
LDLR-212ENST00000560467 CABP5Q9NP86 173 aa13.9□□□□□ -0.18
LDLR-212ENST00000560467 RBM8AQ9Y5S9 174 aaKnown RBP13.9□□□□□ -0.18
LDLR-212ENST00000560467 A0A1W2PRG0 241 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 DNM1LO00429 736 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 ST18O60284 1047 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 IGHA2P01877 340 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 CYBAP13498 195 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 PTH1RQ03431 593 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 TRDNQ13061 729 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 RABEP1Q15276 862 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 GJC2Q5T442 439 aaPredicted RBP13.89□□□□□ -0.19
LDLR-212ENST00000560467 ANO1Q5XXA6 986 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 GIMAP6Q6P9H5 292 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 MOV10L1Q9BXT6 1211 aaKnown RBP13.89□□□□□ -0.19
LDLR-212ENST00000560467 ATP8A2Q9NTI2 1148 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 CDK5RAP2Q96SN8 1893 aa13.89□□□□□ -0.19
LDLR-212ENST00000560467 FOCADQ5VW36 1801 aa13.88□□□□□ -0.19
LDLR-212ENST00000560467 MSCO60682 206 aa13.88□□□□□ -0.19
LDLR-212ENST00000560467 POLR3DP05423 398 aaPredicted RBP13.88□□□□□ -0.19
LDLR-212ENST00000560467 HMGB1P09429 215 aaKnown RBP13.88□□□□□ -0.19
LDLR-212ENST00000560467 ADORA2AP29274 412 aa13.88□□□□□ -0.19
LDLR-212ENST00000560467 GABPAQ06546 454 aa13.88□□□□□ -0.19
LDLR-212ENST00000560467 ALX1Q15699 326 aa13.88□□□□□ -0.19
LDLR-212ENST00000560467 SLFNL1Q499Z3 407 aa13.88□□□□□ -0.19
LDLR-212ENST00000560467 KIAA1755Q5JYT7 1200 aa13.88□□□□□ -0.19
LDLR-212ENST00000560467 TANGO6Q9C0B7 1094 aa13.88□□□□□ -0.19
LDLR-212ENST00000560467 ATP11BQ9Y2G3 1177 aa13.88□□□□□ -0.19
LDLR-212ENST00000560467 POTEB2H3BUK9 544 aa13.87□□□□□ -0.19
LDLR-212ENST00000560467 MPHOSPH10O00566 681 aaKnown RBP13.87□□□□□ -0.19
LDLR-212ENST00000560467 CYP2D6P10635 497 aa13.87□□□□□ -0.19
LDLR-212ENST00000560467 CREB3L3Q68CJ9 461 aa13.87□□□□□ -0.19
LDLR-212ENST00000560467 DPP9Q86TI2 863 aa13.87□□□□□ -0.19
LDLR-212ENST00000560467 CLEC10AQ8IUN9 316 aa13.87□□□□□ -0.19
LDLR-212ENST00000560467 IFNL3Q8IZI9 196 aa13.87□□□□□ -0.19
LDLR-212ENST00000560467 LCORLQ8N3X6 602 aa13.87□□□□□ -0.19
LDLR-212ENST00000560467 SLC44A5Q8NCS7 719 aa13.87□□□□□ -0.19
LDLR-212ENST00000560467 COL25A1Q9BXS0 654 aaPredicted RBP13.87□□□□□ -0.19
LDLR-212ENST00000560467 SPATC1LQ9H0A9 340 aa13.87□□□□□ -0.19
LDLR-212ENST00000560467 MCM9Q9NXL9 1143 aa13.87□□□□□ -0.19
LDLR-212ENST00000560467 UNC80Q8N2C7 3258 aa13.86□□□□□ -0.19
LDLR-212ENST00000560467 COBLO75128 1261 aa13.86□□□□□ -0.19
LDLR-212ENST00000560467 FGAP02671 866 aa13.86□□□□□ -0.19
LDLR-212ENST00000560467 MYCNP04198 464 aaPredicted RBP13.86□□□□□ -0.19
LDLR-212ENST00000560467 CHGBP05060 677 aa13.86□□□□□ -0.19
LDLR-212ENST00000560467 ERCC3P19447 782 aa13.86□□□□□ -0.19
LDLR-212ENST00000560467 FGD1P98174 961 aa13.86□□□□□ -0.19
LDLR-212ENST00000560467 NECTIN1Q15223 517 aa13.86□□□□□ -0.19
LDLR-212ENST00000560467 PRAMEF19Q5SWL8 479 aa13.86□□□□□ -0.19
LDLR-212ENST00000560467 OLFML2BQ68BL8 750 aa13.86□□□□□ -0.19
LDLR-212ENST00000560467 FAM109BQ6ICB4 259 aaPredicted RBP13.86□□□□□ -0.19
LDLR-212ENST00000560467 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.86□□□□□ -0.19
LDLR-212ENST00000560467 RNF41Q9H4P4 317 aaPredicted RBP13.86□□□□□ -0.19
LDLR-212ENST00000560467 ZNF287Q9HBT7 754 aa13.86□□□□□ -0.19
LDLR-212ENST00000560467 PRDM5Q9NQX1 630 aaPredicted RBP13.86□□□□□ -0.19
LDLR-212ENST00000560467 PRKAG2Q9UGJ0 569 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms