RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ERICH2A1L162 156 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 PLA2G6O60733 806 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 FDX1P10109 184 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 HSPA4P34932 840 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 ERVK-9P63128 1117 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 ERVK-24P63145 666 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 CCNA1P78396 465 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 FAM160B2Q86V87 743 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 MB21D2Q8IYB1 491 aaPredicted RBP15.27■□□□□ 0.04
NEDD8-208ENST00000560427 ENAHQ8N8S7 591 aaPredicted RBP15.27■□□□□ 0.04
NEDD8-208ENST00000560427 NKX2-3Q8TAU0 364 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 KCNB2Q92953 911 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 SLF1Q9BQI6 1058 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 KAT14Q9H8E8 782 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 EFCC1Q9HA90 598 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 RBPJLQ9UBG7 517 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 FEM1BQ9UK73 627 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 ADAMTS5Q9UNA0 930 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 TAF6LQ9Y6J9 622 aa15.27■□□□□ 0.04
NEDD8-208ENST00000560427 WDR19Q8NEZ3 1342 aa15.26■□□□□ 0.03
NEDD8-208ENST00000560427 SNHG28P0DPA3 235 aa15.26■□□□□ 0.03
NEDD8-208ENST00000560427 HOXD10P28358 340 aa15.26■□□□□ 0.03
NEDD8-208ENST00000560427 MCM5P33992 734 aa15.26■□□□□ 0.03
NEDD8-208ENST00000560427 STAT2P52630 851 aa15.26■□□□□ 0.03
NEDD8-208ENST00000560427 IFIT1BQ5T764 474 aaKnown RBP15.26■□□□□ 0.03
NEDD8-208ENST00000560427 CYB5R4Q7L1T6 521 aa15.26■□□□□ 0.03
NEDD8-208ENST00000560427 ZKSCAN3Q9BRR0 538 aa15.26■□□□□ 0.03
NEDD8-208ENST00000560427 TXNRD2Q9NNW7 524 aa15.26■□□□□ 0.03
NEDD8-208ENST00000560427 CASP8AP2Q9UKL3 1982 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 RLFQ13129 1914 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 PARP14Q460N5 1801 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 HMGB1P09429 215 aaKnown RBP15.25■□□□□ 0.03
NEDD8-208ENST00000560427 MCCP23508 829 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 MAPK4P31152 587 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 COPB2P35606 906 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 PSMC4P43686 418 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 SEC23AQ15436 765 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 COL13A1Q5TAT6 717 aaPredicted RBP15.25■□□□□ 0.03
NEDD8-208ENST00000560427 OTOP1Q7RTM1 612 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 PRPF38AQ8NAV1 312 aaKnown RBP15.25■□□□□ 0.03
NEDD8-208ENST00000560427 PNMA1Q8ND90 353 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 CHURC1Q8WUH1 139 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 TMEM87BQ96K49 555 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 NUP88Q99567 741 aaPredicted RBP15.25■□□□□ 0.03
NEDD8-208ENST00000560427 PAGR1Q9BTK6 254 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 TRIM17Q9Y577 477 aa15.25■□□□□ 0.03
NEDD8-208ENST00000560427 VWA5AO00534 786 aa15.24■□□□□ 0.03
NEDD8-208ENST00000560427 IFIT3O14879 490 aaKnown RBP15.24■□□□□ 0.03
NEDD8-208ENST00000560427 CNMDO75829 334 aa15.24■□□□□ 0.03
NEDD8-208ENST00000560427 FMNL1O95466 1100 aaPredicted RBP15.24■□□□□ 0.03
NEDD8-208ENST00000560427 PDHBP11177 359 aa15.24■□□□□ 0.03
NEDD8-208ENST00000560427 GPATCH4Q5T3I0 446 aaKnown RBP15.24■□□□□ 0.03
NEDD8-208ENST00000560427 POTEEQ6S8J3 1075 aa15.24■□□□□ 0.03
NEDD8-208ENST00000560427 SHCBP1Q8NEM2 672 aa15.24■□□□□ 0.03
NEDD8-208ENST00000560427 COA7Q96BR5 231 aa15.24■□□□□ 0.03
NEDD8-208ENST00000560427 ATG4CQ96DT6 458 aa15.24■□□□□ 0.03
NEDD8-208ENST00000560427 TRIM47Q96LD4 638 aa15.24■□□□□ 0.03
NEDD8-208ENST00000560427 NEK1Q96PY6 1258 aa15.24■□□□□ 0.03
NEDD8-208ENST00000560427 TMEM232C9JQI7 657 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 TNPO2O14787 897 aaKnown RBP15.23■□□□□ 0.03
NEDD8-208ENST00000560427 ATP2A1O14983 1001 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 OAZ1P54368 228 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 ANTXR2P58335 489 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 WTAPQ15007 396 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 CCDC96Q2M329 555 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 TMEM67Q5HYA8 995 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 FBXO46Q6PJ61 603 aaPredicted RBP15.23■□□□□ 0.03
NEDD8-208ENST00000560427 BTNL9Q6UXG8 535 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 CCAR1Q8IX12 1150 aaKnown RBP15.23■□□□□ 0.03
NEDD8-208ENST00000560427 TMTC2Q8N394 836 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 ARHGAP39Q9C0H5 1083 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 SPATC1LQ9H0A9 340 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 FBXO28Q9NVF7 368 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 BTBD7Q9P203 1132 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 SRRDQ9UH36 339 aa15.23■□□□□ 0.03
NEDD8-208ENST00000560427 PRC1O43663 620 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 ZBED4O75132 1171 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 SLC25A27O95847 323 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 CTGFP29279 349 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 ZNF543Q08ER8 600 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 IKQ13123 557 aaPredicted RBP15.22■□□□□ 0.03
NEDD8-208ENST00000560427 Q3C1V9 767 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 ASPRV1Q53RT3 343 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 RASEFQ8IZ41 740 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 REPS2Q8NFH8 660 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 IGDCC4Q8TDY8 1250 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 SOCS4Q8WXH5 440 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 KIFC2Q96AC6 838 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 TEX13BQ9BXU2 312 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 USP26Q9BXU7 913 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 MCOLN1Q9GZU1 580 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 SLC38A10Q9HBR0 1119 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 PNMA2Q9UL42 364 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 ISY1Q9ULR0 285 aaKnown RBP15.22■□□□□ 0.03
NEDD8-208ENST00000560427 PTPN22Q9Y2R2 807 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 GTF3C3Q9Y5Q9 886 aa15.22■□□□□ 0.03
NEDD8-208ENST00000560427 PSMA5P28066 241 aa15.21■□□□□ 0.03
NEDD8-208ENST00000560427 LIFRP42702 1097 aa15.21■□□□□ 0.03
NEDD8-208ENST00000560427 CAP1Q01518 475 aa15.21■□□□□ 0.03
NEDD8-208ENST00000560427 TMEM132BQ14DG7 1078 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms