RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 HGSO14964 777 aaPredicted RBP7.91□□□□□ -1.14
USP3-210ENST00000559192 ATP6V1AP38606 617 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 PTGDRQ13258 359 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 SV2BQ7L1I2 683 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 PAGE5Q96GU1 130 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 ZNF287Q9HBT7 754 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 HDAC6Q9UBN7 1215 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 PARP3Q9Y6F1 533 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 CDC42BPGQ6DT37 1551 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 FRMD3A2A2Y4 597 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 NUTM2BA6NNL0 878 aaPredicted RBP7.91□□□□□ -1.14
USP3-210ENST00000559192 NUTM2EB1AL46 878 aaPredicted RBP7.91□□□□□ -1.14
USP3-210ENST00000559192 TBC1D10CQ8IV04 446 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 HAUS4Q9H6D7 363 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 NLRC4Q9NPP4 1024 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 MAP2P11137 1827 aaKnown RBP7.91□□□□□ -1.14
USP3-210ENST00000559192 TRAF5O00463 557 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 ERCC5P28715 1186 aaPredicted RBP7.91□□□□□ -1.14
USP3-210ENST00000559192 CDC25AP30304 524 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 ARHGAP25P42331 645 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 PAK2Q13177 524 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 DCAF17Q5H9S7 520 aaPredicted RBP7.91□□□□□ -1.14
USP3-210ENST00000559192 CEP85LQ5SZL2 805 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 TRMT1LQ7Z2T5 733 aaKnown RBP7.91□□□□□ -1.14
USP3-210ENST00000559192 CNKSR2Q8WXI2 1034 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 MRPL44Q9H9J2 332 aaKnown RBP7.91□□□□□ -1.14
USP3-210ENST00000559192 EFCC1Q9HA90 598 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 NEDD4P46934 1319 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 CDC27P30260 824 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 GGCXP38435 758 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 TXKP42681 527 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 RBM5P52756 815 aaKnown RBP eCLIP7.91□□□□□ -1.14
USP3-210ENST00000559192 CFAP221Q4G0U5 840 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 METTL16Q86W50 562 aaKnown RBP7.91□□□□□ -1.14
USP3-210ENST00000559192 CCDC25Q86WR0 208 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 CCDC155Q8N6L0 562 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 GPKOWQ92917 476 aaPredicted RBP eCLIP7.91□□□□□ -1.14
USP3-210ENST00000559192 TNKSO95271 1327 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 PCDH11XQ9BZA7 1347 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 PCDH11YQ9BZA8 1340 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 A2ML1A8K2U0 1454 aa7.91□□□□□ -1.14
USP3-210ENST00000559192 FRMPD1Q5SYB0 1578 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 PRKAB2O43741 272 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 N4BP1O75113 896 aaKnown RBP7.9□□□□□ -1.14
USP3-210ENST00000559192 MOCS3O95396 460 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 PARP1P09874 1014 aaKnown RBP7.9□□□□□ -1.14
USP3-210ENST00000559192 PHKA1P46020 1223 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 TNNI2P48788 182 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 CNNM4Q6P4Q7 775 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 NSRP1Q9H0G5 558 aaKnown RBP7.9□□□□□ -1.14
USP3-210ENST00000559192 C6orf50Q9HD87 102 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 LRWD1Q9UFC0 647 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 SAP30BPQ9UHR5 308 aaKnown RBP7.9□□□□□ -1.14
USP3-210ENST00000559192 ZNF652Q9Y2D9 606 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 CEP104O60308 925 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 NOL3O60936 208 aaKnown RBP7.9□□□□□ -1.14
USP3-210ENST00000559192 MAGEA9P43362 315 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 FMR1Q06787 632 aaKnown RBP eCLIP7.9□□□□□ -1.14
USP3-210ENST00000559192 KRT31Q15323 416 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 CABP7Q86V35 215 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 ZSCAN29Q8IWY8 852 aaPredicted RBP7.9□□□□□ -1.14
USP3-210ENST00000559192 ARFGAP2Q8N6H7 521 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 RPGRIP1Q96KN7 1286 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 ZSCAN10Q96SZ4 725 aaPredicted RBP7.9□□□□□ -1.14
USP3-210ENST00000559192 BUB1BO60566 1050 aaPredicted RBP7.9□□□□□ -1.14
USP3-210ENST00000559192 VIMP08670 466 aaKnown RBP7.9□□□□□ -1.14
USP3-210ENST00000559192 TRIM58Q8NG06 486 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 TAOK3Q9H2K8 898 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 FOXP1Q9H334 677 aaPredicted RBP7.9□□□□□ -1.14
USP3-210ENST00000559192 AATFQ9NY61 560 aaKnown RBP eCLIP7.9□□□□□ -1.14
USP3-210ENST00000559192 NIP7Q9Y221 180 aaKnown RBP eCLIP7.9□□□□□ -1.14
USP3-210ENST00000559192 HYOU1Q9Y4L1 999 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 PXDNLA1KZ92 1463 aa7.9□□□□□ -1.14
USP3-210ENST00000559192 GTPBP6O43824 516 aaPredicted RBP7.9□□□□□ -1.15
USP3-210ENST00000559192 NDUFA10O95299 355 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 VSNL1P62760 191 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 ASIC2Q16515 512 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 TSGA10IPQ3SY00 556 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 SEPT14Q6ZU15 432 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 LMNTD2Q8IXW0 634 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 PAF1Q8N7H5 531 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 OXER1Q8TDS5 423 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 LPIN2Q92539 896 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 RRP36Q96EU6 259 aaKnown RBP7.9□□□□□ -1.15
USP3-210ENST00000559192 CABS1Q96KC9 395 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 DDX23Q9BUQ8 820 aaKnown RBP7.9□□□□□ -1.15
USP3-210ENST00000559192 LRRC27Q9C0I9 530 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 GREM2Q9H772 168 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 SUGCTQ9HAC7 445 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 SAMD15Q9P1V8 674 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 DLC1Q96QB1 1528 aa7.9□□□□□ -1.15
USP3-210ENST00000559192 EXOSC10Q01780 885 aaKnown RBP7.89□□□□□ -1.15
USP3-210ENST00000559192 GUCY2DQ02846 1103 aa7.89□□□□□ -1.15
USP3-210ENST00000559192 KRT79Q5XKE5 535 aa7.89□□□□□ -1.15
USP3-210ENST00000559192 RBM43Q6ZSC3 357 aaKnown RBP7.89□□□□□ -1.15
USP3-210ENST00000559192 SRLQ86TD4 932 aa7.89□□□□□ -1.15
USP3-210ENST00000559192 CEP120Q8N960 986 aa7.89□□□□□ -1.15
USP3-210ENST00000559192 PCK1P35558 622 aa7.89□□□□□ -1.15
USP3-210ENST00000559192 CYP27A1Q02318 531 aa7.89□□□□□ -1.15
USP3-210ENST00000559192 NELFCDQ8IXH7 590 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms