RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CPDO75976 1380 aa12.72□□□□□ -0.37
LDLR-208ENST00000558518 IRS4O14654 1257 aaPredicted RBP12.71□□□□□ -0.37
LDLR-208ENST00000558518 SLC20A2Q08357 652 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 TBC1D8BQ0IIM8 1120 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 HLFQ16534 295 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 TADA2BQ86TJ2 420 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 GPKOWQ92917 476 aaPredicted RBP eCLIP12.71□□□□□ -0.377e-9■□□□□ 10.9
LDLR-208ENST00000558518 MLXIPQ9HAP2 919 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 HPCAL4Q9UM19 191 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 FAM169AQ9Y6X4 670 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 CCDC196A0A1B0GTZ2 297 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 PPP1R3GB7ZBB8 358 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 KRT86O43790 486 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 ECM2O94769 699 aaPredicted RBP12.71□□□□□ -0.37
LDLR-208ENST00000558518 SYF2O95926 243 aaKnown RBP12.71□□□□□ -0.37
LDLR-208ENST00000558518 PARP1P09874 1014 aaKnown RBP12.71□□□□□ -0.37
LDLR-208ENST00000558518 PRCPP42785 496 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 SPA17Q15506 151 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 TDRD12Q587J7 1177 aaKnown RBP12.71□□□□□ -0.37
LDLR-208ENST00000558518 IQUBQ8NA54 791 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 MSANTD4Q8NCY6 345 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 CAPS2Q9BXY5 557 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 LRWD1Q9UFC0 647 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 TACC3Q9Y6A5 838 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 RGPD2P0DJD1 1756 aa12.71□□□□□ -0.37
LDLR-208ENST00000558518 AKR1B10O60218 316 aa12.71□□□□□ -0.38
LDLR-208ENST00000558518 PLEKP08567 350 aaPredicted RBP12.71□□□□□ -0.38
LDLR-208ENST00000558518 INPP5BP32019 993 aa12.71□□□□□ -0.38
LDLR-208ENST00000558518 ARHGAP25P42331 645 aa12.71□□□□□ -0.38
LDLR-208ENST00000558518 USP14P54578 494 aa12.71□□□□□ -0.38
LDLR-208ENST00000558518 MED4Q9NPJ6 270 aa12.71□□□□□ -0.38
LDLR-208ENST00000558518 ATG3Q9NT62 314 aa12.71□□□□□ -0.38
LDLR-208ENST00000558518 SETD1AO15047 1707 aaKnown RBP12.7□□□□□ -0.38
LDLR-208ENST00000558518 VEGFAP15692 232 aaPredicted RBP12.7□□□□□ -0.38
LDLR-208ENST00000558518 KIF5AQ12840 1032 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 TCP11X2Q5H9J9 407 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 LRP10Q7Z4F1 713 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 MAATS1Q7Z4T9 603 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 CCDC42Q96M95 316 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 KRT23Q9C075 422 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 MYH8P13535 1937 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 PLEKHG2Q9H7P9 1386 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 PDE2AO00408 941 aaPredicted RBP12.7□□□□□ -0.38
LDLR-208ENST00000558518 MOCS3O95396 460 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 SPATA5Q8NB90 893 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 TTLL11Q8NHH1 800 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 LRRC1Q9BTT6 524 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 GPR108Q9NPR9 543 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 PSD3Q9NYI0 1048 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 CORO7P57737 925 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 TMC4Q7Z404 712 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 CATIPQ7Z7H3 387 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 PRDM11Q9NQV5 511 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 DMGDHQ9UI17 866 aaKnown RBP12.7□□□□□ -0.38
LDLR-208ENST00000558518 RAB21Q9UL25 225 aa12.7□□□□□ -0.38
LDLR-208ENST00000558518 CHD2O14647 1828 aaKnown RBP12.7□□□□□ -0.38
LDLR-208ENST00000558518 SOS2Q07890 1332 aaPredicted RBP12.7□□□□□ -0.38
LDLR-208ENST00000558518 RCCD1A6NED2 376 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 KRT14P02533 472 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 SARSP49591 514 aaKnown RBP12.69□□□□□ -0.38
LDLR-208ENST00000558518 PMS1P54277 932 aaKnown RBP12.69□□□□□ -0.38
LDLR-208ENST00000558518 SETQ01105 290 aaPredicted RBP12.69□□□□□ -0.38
LDLR-208ENST00000558518 RASGRF1Q13972 1273 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 HLTFQ14527 1009 aaKnown RBP eCLIP12.69□□□□□ -0.38
LDLR-208ENST00000558518 NFRKBQ6P4R8 1299 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 C2CD5Q86YS7 1000 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 CSGALNACT2Q8N6G5 542 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 TRIML1Q8N9V2 468 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 COG1Q8WTW3 980 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 JPH2Q9BR39 696 aaPredicted RBP12.69□□□□□ -0.38
LDLR-208ENST00000558518 FOXP1Q9H334 677 aaPredicted RBP12.69□□□□□ -0.38
LDLR-208ENST00000558518 KDM6AO15550 1401 aaPredicted RBP12.69□□□□□ -0.38
LDLR-208ENST00000558518 RFX7Q2KHR2 1363 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 MYO1FO00160 1098 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 EXOC5O00471 708 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 UBA7P41226 1012 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 EVA1CP58658 441 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 CEP57Q86XR8 500 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 OTUD6BQ8N6M0 293 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 HNRNPLLQ8WVV9 542 aaKnown RBP12.69□□□□□ -0.38
LDLR-208ENST00000558518 FRMD3A2A2Y4 597 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 RPN1P04843 607 aaKnown RBP12.69□□□□□ -0.38
LDLR-208ENST00000558518 APBA1Q02410 837 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 EVX2Q03828 476 aa12.69□□□□□ -0.38
LDLR-208ENST00000558518 REXO2Q9Y3B8 237 aaKnown RBP12.69□□□□□ -0.38
LDLR-208ENST00000558518 ODF2Q5BJF6 829 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 ARL8AQ96BM9 186 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 MS4A14Q96JA4 679 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 VAT1LQ9HCJ6 419 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 PPANQ9NQ55 473 aaKnown RBP12.68□□□□□ -0.38
LDLR-208ENST00000558518 ASAP1Q9ULH1 1129 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 LAMA4Q16363 1823 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 HEG1Q9ULI3 1381 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 ZSCAN5CA6NGD5 496 aaPredicted RBP12.68□□□□□ -0.38
LDLR-208ENST00000558518 CYLC1P35663 651 aaPredicted RBP12.68□□□□□ -0.38
LDLR-208ENST00000558518 IRAK1P51617 712 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 DYNLL1P63167 89 aaKnown RBP12.68□□□□□ -0.38
LDLR-208ENST00000558518 APTXQ7Z2E3 356 aaKnown RBP12.68□□□□□ -0.38
LDLR-208ENST00000558518 CTCFLQ8NI51 663 aaPredicted RBP12.68□□□□□ -0.38
LDLR-208ENST00000558518 XDHP47989 1333 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms