RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ZKSCAN1P17029 563 aaPredicted RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 RPS12P25398 132 aaKnown RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 ICA1Q05084 483 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 NEDD9Q14511 834 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 KRT32Q14532 448 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 FMNL3Q8IVF7 1028 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 CCDC83Q8IWF9 413 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 CKAP2LQ8IYA6 745 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 TRERF1Q96PN7 1200 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 NAA15Q9BXJ9 866 aaKnown RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 COA1Q9GZY4 146 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 FRMD4BQ9Y2L6 1034 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 MYO3BQ8WXR4 1341 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 PARP14Q460N5 1801 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 CFAP69A5D8W1 941 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 VWA3AA6NCI4 1184 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 ANKRD33BA6NCL7 494 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 KINO60870 393 aaKnown RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 WDHD1O75717 1129 aaPredicted RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 GLRX3O76003 335 aaKnown RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 STK10O94804 968 aaKnown RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 CRYMQ14894 314 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 PUM3Q15397 648 aaKnown RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 ME3Q16798 604 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 CDC37L1Q7L3B6 337 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 HOMER1Q86YM7 354 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 CCDC50Q8IVM0 306 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 TRMT1Q9NXH9 659 aaKnown RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 ZNF330Q9Y3S2 320 aaPredicted RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 A0A0G2JMZ2 1700 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 VPS37CA5D8V6 355 aaPredicted RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 YDJCA8MPS7 323 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 POTECB2RU33 542 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 SEC31AO94979 1220 aaKnown RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 NEFHP12036 1026 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 IGHMBP2P38935 993 aaKnown RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 NLRP12P59046 1061 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 ZKSCAN8Q15776 578 aaPredicted RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 WHAMMP3Q1A5X7 153 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 MAP9Q49MG5 647 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 C4orf46Q504U0 113 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 WLSQ5T9L3 541 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 LRRN4CLQ8ND94 238 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 SMARCC2Q8TAQ2 1214 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 RPGRIP1Q96KN7 1286 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 EYA3Q99504 573 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 CTDP1Q9Y5B0 961 aaPredicted RBP5.95□□□□□ -1.46
USP28-213ENST00000544967 TARSL2A2RTX5 802 aaKnown RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 CHUKO15111 745 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 URI1O94763 535 aaPredicted RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 MAP2K1Q02750 393 aaPredicted RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 TBX2Q13207 712 aaPredicted RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 CAMK4Q16566 473 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 CCDC57Q2TAC2 916 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 PREPLQ4J6C6 727 aaPredicted RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 BRAPQ7Z569 592 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 PODNQ7Z5L7 613 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 SLC51AQ86UW1 340 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 RASEFQ8IZ41 740 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 GPC2Q8N158 579 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 LPIN2Q92539 896 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 DPF2Q92785 391 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 CDC23Q9UJX2 597 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 IQSEC3Q9UPP2 1182 aaPredicted RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 AKAP2Q9Y2D5 859 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 PTPRFP10586 1907 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 CUTAO60888 179 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 PRPF6O94906 941 aaKnown RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 LARGE1O95461 756 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 FECHP22830 423 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 HNRNPH1P31943 449 aaKnown RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 HDLBPQ00341 1268 aaKnown RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 LMNB2Q03252 620 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 ARID5BQ14865 1188 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 SLC4A10Q6U841 1118 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 B4GALNT4Q76KP1 1039 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 TMEM139Q8IV31 216 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 VSTM4Q8IW00 320 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 HELBQ8NG08 1087 aaPredicted RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 AFAP1L1Q8TED9 768 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 CABS1Q96KC9 395 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 FAM210AQ96ND0 272 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 VPS18Q9P253 973 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 MCM8Q9UJA3 840 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 GGA1Q9UJY5 639 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 PPP2R2CQ9Y2T4 447 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 PITPNM2Q9BZ72 1349 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 FAM237AA0A1B0GTK4 181 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 ZNF16P17020 682 aaPredicted RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 ADD1P35611 737 aaKnown RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 EMC10Q5UCC4 262 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 LRCH2Q5VUJ6 765 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 PROCA1Q8NCQ7 364 aaPredicted RBP5.94□□□□□ -1.46
USP28-213ENST00000544967 C3orf20Q8ND61 904 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 AGBL3Q8NEM8 1001 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 MAP4K1Q92918 833 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 ZNRF3Q9ULT6 936 aa5.94□□□□□ -1.46
USP28-213ENST00000544967 RPS6KB1P23443 525 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 ARHGAP25P42331 645 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms