RNA–Protein interactions for RNA: ENST00000512275.5

RFC1-213, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 841 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-213ENST00000512275 RASA3Q14644 834 aa9.37□□□□□ -0.91
RFC1-213ENST00000512275 POU4F3Q15319 338 aa9.37□□□□□ -0.91
RFC1-213ENST00000512275 CC2D1BQ5T0F9 858 aaKnown RBP9.37□□□□□ -0.91
RFC1-213ENST00000512275 MSL1Q68DK7 614 aa9.37□□□□□ -0.91
RFC1-213ENST00000512275 SDE2Q6IQ49 451 aa9.37□□□□□ -0.91
RFC1-213ENST00000512275 LRP10Q7Z4F1 713 aa9.37□□□□□ -0.91
RFC1-213ENST00000512275 WFDC8Q8IUA0 241 aa9.37□□□□□ -0.91
RFC1-213ENST00000512275 CORO1BQ9BR76 489 aa9.37□□□□□ -0.91
RFC1-213ENST00000512275 MSRB2Q9Y3D2 182 aa9.37□□□□□ -0.91
RFC1-213ENST00000512275 KNSTRNQ9Y448 316 aa9.37□□□□□ -0.91
RFC1-213ENST00000512275 PCDHB14Q9Y5E9 798 aa9.37□□□□□ -0.91
RFC1-213ENST00000512275 KTN1Q86UP2 1357 aaKnown RBP9.37□□□□□ -0.91
RFC1-213ENST00000512275 PIK3R2O00459 728 aa9.36□□□□□ -0.91
RFC1-213ENST00000512275 ZNF862O60290 1169 aa9.36□□□□□ -0.91
RFC1-213ENST00000512275 MAOBP27338 520 aa9.36□□□□□ -0.91
RFC1-213ENST00000512275 SETDB1Q15047 1291 aa9.36□□□□□ -0.91
RFC1-213ENST00000512275 HDGFL2Q7Z4V5 671 aaPredicted RBP9.36□□□□□ -0.91
RFC1-213ENST00000512275 MRFAP1L1Q96HT8 127 aa9.36□□□□□ -0.91
RFC1-213ENST00000512275 CARD10Q9BWT7 1032 aa9.36□□□□□ -0.91
RFC1-213ENST00000512275 ZC3H12CQ9C0D7 883 aaKnown RBP9.36□□□□□ -0.91
RFC1-213ENST00000512275 PRKRIP1Q9H875 184 aaPredicted RBP9.36□□□□□ -0.91
RFC1-213ENST00000512275 SNTG2Q9NY99 539 aa9.36□□□□□ -0.91
RFC1-213ENST00000512275 TERF2IPQ9NYB0 399 aa9.36□□□□□ -0.91
RFC1-213ENST00000512275 LTBP4Q8N2S1 1624 aa9.35□□□□□ -0.91
RFC1-213ENST00000512275 MEIS3P2A8K0S8 358 aa9.35□□□□□ -0.91
RFC1-213ENST00000512275 WIPI1Q5MNZ9 446 aaPredicted RBP9.35□□□□□ -0.91
RFC1-213ENST00000512275 LRFN4Q6PJG9 635 aa9.35□□□□□ -0.91
RFC1-213ENST00000512275 CELF2-AS1Q8N7Q2 184 aa9.35□□□□□ -0.91
RFC1-213ENST00000512275 KLHL23Q8NBE8 558 aa9.35□□□□□ -0.91
RFC1-213ENST00000512275 KLHDC7BQ96G42 594 aa9.35□□□□□ -0.91
RFC1-213ENST00000512275 PLPPR2Q96GM1 343 aa9.35□□□□□ -0.91
RFC1-213ENST00000512275 CRBNQ96SW2 442 aa9.35□□□□□ -0.91
RFC1-213ENST00000512275 PCDHA4Q9UN74 947 aa9.35□□□□□ -0.91
RFC1-213ENST00000512275 MSH6P52701 1360 aa9.35□□□□□ -0.91
RFC1-213ENST00000512275 DCCP43146 1447 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 MST1RQ04912 1400 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 CPSF1Q10570 1443 aaKnown RBP9.34□□□□□ -0.91
RFC1-213ENST00000512275 NCOA3Q9Y6Q9 1424 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 GRIN3BO60391 1043 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 NID1P14543 1247 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 CASP7P55210 303 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 INPP5AQ14642 412 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 KIF4BQ2VIQ3 1234 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 FBXW10Q5XX13 1052 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 C19orf47Q8N9M1 422 aaKnown RBP9.34□□□□□ -0.91
RFC1-213ENST00000512275 GALNT11Q8NCW6 608 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 DEPDC7Q96QD5 511 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 ACTR10Q9NZ32 417 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 TACC3Q9Y6A5 838 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 SNCAIPQ9Y6H5 919 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 PARD3Q8TEW0 1356 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 C1orf167Q5SNV9 1468 aa9.34□□□□□ -0.91
RFC1-213ENST00000512275 ACEP12821 1306 aa9.33□□□□□ -0.92
RFC1-213ENST00000512275 PIK3C2AO00443 1686 aa9.33□□□□□ -0.92
RFC1-213ENST00000512275 EDC4Q6P2E9 1401 aaKnown RBP9.33□□□□□ -0.92
RFC1-213ENST00000512275 U2SURPO15042 1029 aaKnown RBP9.33□□□□□ -0.92
RFC1-213ENST00000512275 MAP4K3Q8IVH8 894 aa9.33□□□□□ -0.92
RFC1-213ENST00000512275 ACSBG1Q96GR2 724 aa9.33□□□□□ -0.92
RFC1-213ENST00000512275 SRPK1Q96SB4 655 aaKnown RBP9.33□□□□□ -0.92
RFC1-213ENST00000512275 TNKS2Q9H2K2 1166 aa9.33□□□□□ -0.92
RFC1-213ENST00000512275 C19orf44Q9H6X5 657 aa9.33□□□□□ -0.92
RFC1-213ENST00000512275 R3HCC1Q9Y3T6 440 aaKnown RBP9.33□□□□□ -0.92
RFC1-213ENST00000512275 PCDHGC5Q9Y5F6 944 aa9.33□□□□□ -0.92
RFC1-213ENST00000512275 MARF1Q9Y4F3 1742 aaKnown RBP9.33□□□□□ -0.92
RFC1-213ENST00000512275 USP6P35125 1406 aa9.32□□□□□ -0.92
RFC1-213ENST00000512275 TRPM3Q9HCF6 1732 aaPredicted RBP9.32□□□□□ -0.92
RFC1-213ENST00000512275 LOC100289279A0A1B0GTE1 492 aa9.32□□□□□ -0.92
RFC1-213ENST00000512275 FAM221BA6H8Z2 402 aa9.32□□□□□ -0.92
RFC1-213ENST00000512275 ADAM11O75078 769 aa9.32□□□□□ -0.92
RFC1-213ENST00000512275 HTR3BO95264 441 aa9.32□□□□□ -0.92
RFC1-213ENST00000512275 ATF3P18847 181 aa9.32□□□□□ -0.92
RFC1-213ENST00000512275 DDR2Q16832 855 aa9.32□□□□□ -0.92
RFC1-213ENST00000512275 EGFLAMQ63HQ2 1017 aa9.32□□□□□ -0.92
RFC1-213ENST00000512275 CYFIP1Q7L576 1253 aa9.32□□□□□ -0.92
RFC1-213ENST00000512275 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.32□□□□□ -0.927e-6■■□□□ 11.5
RFC1-213ENST00000512275 WDR89Q96FK6 387 aaPredicted RBP9.32□□□□□ -0.92
RFC1-213ENST00000512275 NOP53Q9NZM5 478 aaKnown RBP9.32□□□□□ -0.92
RFC1-213ENST00000512275 MRPL42Q9Y6G3 142 aaKnown RBP9.32□□□□□ -0.92
RFC1-213ENST00000512275 NPC1L1Q9UHC9 1359 aa9.32□□□□□ -0.92
RFC1-213ENST00000512275 CGNL1Q0VF96 1302 aa9.31□□□□□ -0.92
RFC1-213ENST00000512275 MAP2P11137 1827 aaKnown RBP9.31□□□□□ -0.92
RFC1-213ENST00000512275 DEAF1O75398 565 aaPredicted RBP9.31□□□□□ -0.92
RFC1-213ENST00000512275 RALBP1Q15311 655 aa9.31□□□□□ -0.92
RFC1-213ENST00000512275 NGDNQ8NEJ9 315 aaKnown RBP9.31□□□□□ -0.92
RFC1-213ENST00000512275 CCDC113Q9H0I3 377 aa9.31□□□□□ -0.92
RFC1-213ENST00000512275 ANTXR1Q9H6X2 564 aa9.31□□□□□ -0.92
RFC1-213ENST00000512275 CORINQ9Y5Q5 1042 aa9.31□□□□□ -0.92
RFC1-213ENST00000512275 POLR3AO14802 1390 aaPredicted RBP9.31□□□□□ -0.92
RFC1-213ENST00000512275 SYNGAP1Q96PV0 1343 aa9.31□□□□□ -0.92
RFC1-213ENST00000512275 MYBBP1AQ9BQG0 1328 aaKnown RBP9.31□□□□□ -0.92
RFC1-213ENST00000512275 USP54Q70EL1 1684 aa9.3□□□□□ -0.92
RFC1-213ENST00000512275 NSD2O96028 1365 aa9.3□□□□□ -0.92
RFC1-213ENST00000512275 C1QTNF9BB2RNN3 333 aa9.3□□□□□ -0.92
RFC1-213ENST00000512275 CCER2I3L3R5 266 aa9.3□□□□□ -0.92
RFC1-213ENST00000512275 DLGAP3O95886 979 aa9.3□□□□□ -0.92
RFC1-213ENST00000512275 HSP90B1P14625 803 aaKnown RBP9.3□□□□□ -0.92
RFC1-213ENST00000512275 LIG1P18858 919 aa9.3□□□□□ -0.92
RFC1-213ENST00000512275 NLRP12P59046 1061 aa9.3□□□□□ -0.92
RFC1-213ENST00000512275 LRRFIP1Q32MZ4 808 aaKnown RBP9.3□□□□□ -0.92
RFC1-213ENST00000512275 FOXD4L6Q3SYB3 417 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms