RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PWP1Q13610 501 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 SSPNQ14714 243 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 DBX2Q6ZNG2 339 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 CEP128Q6ZU80 1094 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 NLRX1Q86UT6 975 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 SYTL5Q8TDW5 730 aaPredicted RBP5.5□□□□□ -1.53
NUP54-208ENST00000508604 SHISA4Q96DD7 197 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 A0A0G2JLL6 359 aaPredicted RBP5.49□□□□□ -1.53
NUP54-208ENST00000508604 NRDCO43847 1150 aa5.49□□□□□ -1.53
NUP54-208ENST00000508604 USP2O75604 605 aaPredicted RBP5.49□□□□□ -1.53
NUP54-208ENST00000508604 HTR3BO95264 441 aa5.49□□□□□ -1.53
NUP54-208ENST00000508604 AFF3P51826 1226 aaKnown RBP5.49□□□□□ -1.53
NUP54-208ENST00000508604 KIF2CQ99661 725 aa5.49□□□□□ -1.53
NUP54-208ENST00000508604 KRTAP9-3Q9BYQ3 159 aa5.49□□□□□ -1.53
NUP54-208ENST00000508604 PARP2Q9UGN5 583 aa5.49□□□□□ -1.53
NUP54-208ENST00000508604 EBF1Q9UH73 591 aa5.49□□□□□ -1.53
NUP54-208ENST00000508604 PRR36Q9H6K5 1346 aa5.49□□□□□ -1.53
NUP54-208ENST00000508604 FAM221AA4D161 298 aa5.48□□□□□ -1.53
NUP54-208ENST00000508604 GRIN3BO60391 1043 aa5.48□□□□□ -1.53
NUP54-208ENST00000508604 F13A1P00488 732 aa5.48□□□□□ -1.53
NUP54-208ENST00000508604 PF4P02776 101 aa5.48□□□□□ -1.53
NUP54-208ENST00000508604 ITGAEP38570 1179 aa5.48□□□□□ -1.53
NUP54-208ENST00000508604 ZNF655Q8N720 491 aaPredicted RBP5.48□□□□□ -1.53
NUP54-208ENST00000508604 DAGLBQ8NCG7 672 aa5.48□□□□□ -1.53
NUP54-208ENST00000508604 MAP6Q96JE9 813 aa5.48□□□□□ -1.53
NUP54-208ENST00000508604 FOXP3Q9BZS1 431 aa5.48□□□□□ -1.53
NUP54-208ENST00000508604 RTEL1Q9NZ71 1219 aa5.48□□□□□ -1.53
NUP54-208ENST00000508604 MBD1Q9UIS9 605 aaPredicted RBP5.48□□□□□ -1.53
NUP54-208ENST00000508604 TCFL5Q9UL49 500 aa5.48□□□□□ -1.53
NUP54-208ENST00000508604 N4BP3O15049 544 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 TRIM13O60858 407 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 PNLIPP16233 465 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 GBP2P32456 591 aaPredicted RBP5.47□□□□□ -1.53
NUP54-208ENST00000508604 ARL4AP40617 200 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 TMEM62Q0P6H9 643 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 SNAP47Q5SQN1 464 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 USHBP1Q8N6Y0 703 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 G6PC3Q9BUM1 346 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.47□□□□□ -1.53
NUP54-208ENST00000508604 ZNF281Q9Y2X9 895 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 USP31Q70CQ4 1352 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 ANKRD33BA6NCL7 494 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 MPOP05164 745 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 RAG1P15918 1043 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 ENDOUP21128 410 aaKnown RBP5.47□□□□□ -1.53
NUP54-208ENST00000508604 DAB2P98082 770 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 MPP2Q14168 576 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 SP8Q8IXZ3 490 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 CXorf38Q8TB03 319 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 TCTN2Q96GX1 697 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 HDAC8Q9BY41 377 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 RNF19AQ9NV58 838 aa5.47□□□□□ -1.53
NUP54-208ENST00000508604 F6X3S4 739 aa5.46□□□□□ -1.54
NUP54-208ENST00000508604 RGS13O14921 159 aa5.46□□□□□ -1.54
NUP54-208ENST00000508604 VIPR1P32241 457 aa5.46□□□□□ -1.54
NUP54-208ENST00000508604 BORCS6Q96GS4 357 aa5.46□□□□□ -1.54
NUP54-208ENST00000508604 TMEM74Q96NL1 305 aa5.46□□□□□ -1.54
NUP54-208ENST00000508604 FKTNO75072 461 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 SYPP08247 313 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 CELA3BP08861 270 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 RTP1P59025 263 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 RAD51AP2Q09MP3 1159 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 GALNT18Q6P9A2 607 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 CNKSR3Q6P9H4 555 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 LINC00116Q8NCU8 138 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 PANK1Q8TE04 598 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 DACT3Q96B18 629 aaPredicted RBP5.45□□□□□ -1.54
NUP54-208ENST00000508604 CRELD1Q96HD1 420 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 RSRP1Q9BUV0 290 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 MRS2Q9HD23 443 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 TNFRSF10DQ9UBN6 386 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 TAF6LQ9Y6J9 622 aa5.45□□□□□ -1.54
NUP54-208ENST00000508604 WTIPA6NIX2 430 aaPredicted RBP5.44□□□□□ -1.54
NUP54-208ENST00000508604 NOTOA8MTQ0 251 aa5.44□□□□□ -1.54
NUP54-208ENST00000508604 FAM160A1Q05DH4 1040 aa5.44□□□□□ -1.54
NUP54-208ENST00000508604 LAPTM5Q13571 262 aa5.44□□□□□ -1.54
NUP54-208ENST00000508604 REC114Q7Z4M0 266 aa5.44□□□□□ -1.54
NUP54-208ENST00000508604 PRRT2Q7Z6L0 340 aaPredicted RBP5.44□□□□□ -1.54
NUP54-208ENST00000508604 GOLM1Q8NBJ4 401 aa5.44□□□□□ -1.54
NUP54-208ENST00000508604 XYLT2Q9H1B5 865 aa5.44□□□□□ -1.54
NUP54-208ENST00000508604 CNTD2Q9H8S5 307 aa5.44□□□□□ -1.54
NUP54-208ENST00000508604 POLR3KQ9Y2Y1 108 aaPredicted RBP5.44□□□□□ -1.54
NUP54-208ENST00000508604 OTOL1A6NHN0 477 aaPredicted RBP5.43□□□□□ -1.54
NUP54-208ENST00000508604 EPHB3P54753 998 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 YBX1P67809 324 aaKnown RBP5.43□□□□□ -1.54
NUP54-208ENST00000508604 CWF19L2Q2TBE0 894 aaKnown RBP5.43□□□□□ -1.54
NUP54-208ENST00000508604 ARSHQ5FYA8 562 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 TMC4Q7Z404 712 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 MZB1Q8WU39 189 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 VWCEQ96DN2 955 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 HHIPL1Q96JK4 782 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 RHOVQ96L33 236 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 FCRL2Q96LA5 508 aaPredicted RBP5.43□□□□□ -1.54
NUP54-208ENST00000508604 JAG2Q9Y219 1238 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 SLC22A31A6NKX4 558 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 MINDY4BA8MYZ0 360 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 SORBS3O60504 671 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 ERVFRD-1P60508 538 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 NBPF9Q3BBW0 867 aa5.43□□□□□ -1.54
NUP54-208ENST00000508604 ROBO2Q9HCK4 1378 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms