RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 CTCFLQ8NI51 663 aaPredicted RBP18.4■□□□□ 0.54
HPS4-216ENST00000493455 DCAF4Q8WV16 495 aa18.4■□□□□ 0.54
HPS4-216ENST00000493455 BTBD19C9JJ37 291 aa18.39■□□□□ 0.53
HPS4-216ENST00000493455 TMEM232C9JQI7 657 aa18.39■□□□□ 0.53
HPS4-216ENST00000493455 WDR46O15213 610 aaKnown RBP18.39■□□□□ 0.53
HPS4-216ENST00000493455 DDAH1O94760 285 aa18.39■□□□□ 0.53
HPS4-216ENST00000493455 PARP1P09874 1014 aaKnown RBP18.39■□□□□ 0.53
HPS4-216ENST00000493455 CCT2P78371 535 aaKnown RBP18.39■□□□□ 0.53
HPS4-216ENST00000493455 SREBF2Q12772 1141 aa18.39■□□□□ 0.53
HPS4-216ENST00000493455 LPAR1Q92633 364 aa18.39■□□□□ 0.53
HPS4-216ENST00000493455 C12orf42Q96LP6 360 aa18.39■□□□□ 0.53
HPS4-216ENST00000493455 DHX16O60231 1041 aaKnown RBP18.38■□□□□ 0.53
HPS4-216ENST00000493455 METAP2P50579 478 aaKnown RBP eCLIP18.38■□□□□ 0.53
HPS4-216ENST00000493455 IRX3P78415 501 aaPredicted RBP18.38■□□□□ 0.53
HPS4-216ENST00000493455 MOGSQ13724 837 aa18.38■□□□□ 0.53
HPS4-216ENST00000493455 TTBK2Q6IQ55 1244 aa18.38■□□□□ 0.53
HPS4-216ENST00000493455 AGXT2Q9BYV1 514 aa18.38■□□□□ 0.53
HPS4-216ENST00000493455 CPVLQ9H3G5 476 aa18.38■□□□□ 0.53
HPS4-216ENST00000493455 TPCN1Q9ULQ1 816 aa18.38■□□□□ 0.53
HPS4-216ENST00000493455 SYNPO2Q9UMS6 1093 aa18.38■□□□□ 0.53
HPS4-216ENST00000493455 AGTPBP1Q9UPW5 1226 aa18.38■□□□□ 0.53
HPS4-216ENST00000493455 PARP14Q460N5 1801 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 PDHXO00330 501 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 FLOT1O75955 427 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 CD2BP2O95400 341 aaKnown RBP18.37■□□□□ 0.53
HPS4-216ENST00000493455 LARGE1O95461 756 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 CALM1P0DP23 149 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 CALM2P0DP24 149 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 CALM3P0DP25 149 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 SLC16A2P36021 539 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 TROAPQ12815 778 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 GRM4Q14833 912 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 RTN1Q16799 776 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 GPAT2Q6NUI2 795 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 FAM43AQ8N2R8 423 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 STAG2Q8N3U4 1231 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 GMCL1Q96IK5 515 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 PTPN18Q99952 460 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 UBA5Q9GZZ9 404 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 ALDH8A1Q9H2A2 487 aaPredicted RBP18.37■□□□□ 0.53
HPS4-216ENST00000493455 FBXO28Q9NVF7 368 aa18.37■□□□□ 0.53
HPS4-216ENST00000493455 USP17L15C9J2P7 530 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 USP17L13C9JLJ4 530 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 USP17L11C9JVI0 530 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 USP17L18D6R9N7 530 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 USP17L22D6RA61 530 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 USP17L17D6RBQ6 530 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 USP17L19D6RCP7 530 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 USP17L20D6RJB6 530 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 IGF2BP3O00425 579 aaKnown RBP eCLIP18.36■□□□□ 0.53
HPS4-216ENST00000493455 MYH6P13533 1939 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 OSBPP22059 807 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 PDIA3P30101 505 aaKnown RBP18.36■□□□□ 0.53
HPS4-216ENST00000493455 ZNF543Q08ER8 600 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 USP17L24Q0WX57 530 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 PABPC4Q13310 644 aaKnown RBP eCLIP18.36■□□□□ 0.53
HPS4-216ENST00000493455 ASPRV1Q53RT3 343 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 CMTR1Q8N1G2 835 aaKnown RBP18.36■□□□□ 0.53
HPS4-216ENST00000493455 CCDC82Q8N4S0 544 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 PIBF1Q8WXW3 757 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 KIFC2Q96AC6 838 aa18.36■□□□□ 0.53
HPS4-216ENST00000493455 SLKQ9H2G2 1235 aaPredicted RBP18.36■□□□□ 0.53
HPS4-216ENST00000493455 NCOA5Q9HCD5 579 aaKnown RBP18.36■□□□□ 0.53
HPS4-216ENST00000493455 COL11A1P12107 1806 aaPredicted RBP18.35■□□□□ 0.53
HPS4-216ENST00000493455 PPFIA3O75145 1194 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 CYP2C8P10632 490 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 KIF5BP33176 963 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 SNAP25P60880 206 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 OTUD7BQ6GQQ9 843 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 CATSPERGQ6ZRH7 1159 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 ANKRD23Q86SG2 305 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 IFNL1Q8IU54 200 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 FBXL16Q8N461 479 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 NECAB1Q8N987 351 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 FANCBQ8NB91 859 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 VAT1LQ9HCJ6 419 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 MAD2L2Q9UI95 211 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 LIMCH1Q9UPQ0 1083 aa18.35■□□□□ 0.53
HPS4-216ENST00000493455 BAZ2BQ9UIF8 2168 aaKnown RBP18.35■□□□□ 0.53
HPS4-216ENST00000493455 KLRF2D3W0D1 207 aa18.34■□□□□ 0.53
HPS4-216ENST00000493455 DTNBO60941 627 aa18.34■□□□□ 0.53
HPS4-216ENST00000493455 PLEKHA8P1O95397 391 aa18.34■□□□□ 0.53
HPS4-216ENST00000493455 SNHG28P0DPA3 235 aa18.34■□□□□ 0.53
HPS4-216ENST00000493455 STAT2P52630 851 aa18.34■□□□□ 0.53
HPS4-216ENST00000493455 TAF1CQ15572 869 aaPredicted RBP18.34■□□□□ 0.53
HPS4-216ENST00000493455 ME3Q16798 604 aa18.34■□□□□ 0.53
HPS4-216ENST00000493455 GPATCH4Q5T3I0 446 aaKnown RBP18.34■□□□□ 0.53
HPS4-216ENST00000493455 SMCR8Q8TEV9 937 aaPredicted RBP18.34■□□□□ 0.53
HPS4-216ENST00000493455 SLF1Q9BQI6 1058 aa18.34■□□□□ 0.53
HPS4-216ENST00000493455 ASCC2Q9H1I8 757 aaPredicted RBP18.34■□□□□ 0.53
HPS4-216ENST00000493455 FEM1BQ9UK73 627 aa18.34■□□□□ 0.53
HPS4-216ENST00000493455 PNMA3Q9UL41 463 aa18.34■□□□□ 0.53
HPS4-216ENST00000493455 HPS5Q9UPZ3 1129 aa18.34■□□□□ 0.53
HPS4-216ENST00000493455 CTDP1Q9Y5B0 961 aaPredicted RBP18.34■□□□□ 0.53
HPS4-216ENST00000493455 TESPA1A2RU30 521 aaPredicted RBP18.33■□□□□ 0.52
HPS4-216ENST00000493455 CDC27P30260 824 aa18.33■□□□□ 0.52
HPS4-216ENST00000493455 ADD1P35611 737 aaKnown RBP18.33■□□□□ 0.52
HPS4-216ENST00000493455 SLC4A3P48751 1232 aa18.33■□□□□ 0.52
HPS4-216ENST00000493455 INHBEP58166 350 aa18.33■□□□□ 0.52
HPS4-216ENST00000493455 CHURC1Q8WUH1 139 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms