RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 OTUD7AQ8TE49 926 aaPredicted RBP8.14□□□□□ -1.11
VPS52-219ENST00000493379 GPATCH3Q96I76 525 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 RIOK1Q9BRS2 568 aaKnown RBP8.14□□□□□ -1.11
VPS52-219ENST00000493379 C1QTNF1Q9BXJ1 281 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 UBE2OQ9C0C9 1292 aaKnown RBP8.14□□□□□ -1.11
VPS52-219ENST00000493379 USP40Q9NVE5 1235 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 RAI14Q9P0K7 980 aa8.14□□□□□ -1.11
VPS52-219ENST00000493379 TFIP11Q9UBB9 837 aaKnown RBP8.14□□□□□ -1.11
VPS52-219ENST00000493379 ATRNL1Q5VV63 1379 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 ZBBXA8MT70 800 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 KRT37O76014 449 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 BAG3O95817 575 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 ALDH1A1P00352 501 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 ZFYP08048 801 aaPredicted RBP8.13□□□□□ -1.11
VPS52-219ENST00000493379 PDE6AP16499 860 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 ADD2P35612 726 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 BTDP43251 543 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 GJA8P48165 433 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 TNNI2P48788 182 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 RBM5P52756 815 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS52-219ENST00000493379 NFIAQ12857 509 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 SLC9C2Q5TAH2 1124 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 FAM160A2Q8N612 972 aaPredicted RBP8.13□□□□□ -1.11
VPS52-219ENST00000493379 EDC3Q96F86 508 aaKnown RBP8.13□□□□□ -1.11
VPS52-219ENST00000493379 UHRF1Q96T88 793 aaPredicted RBP8.13□□□□□ -1.11
VPS52-219ENST00000493379 LNPKQ9C0E8 428 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 ARHGAP39Q9C0H5 1083 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 EPHX3Q9H6B9 360 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 ZNF112Q9UJU3 913 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 CFAP54Q96N23 3096 aa8.13□□□□□ -1.11
VPS52-219ENST00000493379 COL2A1P02458 1487 aaPredicted RBP8.13□□□□□ -1.11
VPS52-219ENST00000493379 CLRN2A0PK11 232 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 GOLIM4O00461 696 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 USP2O75604 605 aaPredicted RBP8.12□□□□□ -1.11
VPS52-219ENST00000493379 DXOO77932 396 aaKnown RBP8.12□□□□□ -1.11
VPS52-219ENST00000493379 FOSL2P15408 326 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 CYP7A1P22680 504 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 PDE4CQ08493 712 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 PRKG1Q13976 671 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 NBPF12Q5TAG4 269 aaPredicted RBP8.12□□□□□ -1.11
VPS52-219ENST00000493379 SPRYD7Q5W111 196 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 ZSCAN25Q6NSZ9 544 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 CENPQQ7L2Z9 268 aaPredicted RBP8.12□□□□□ -1.11
VPS52-219ENST00000493379 SH3BP5LQ7L8J4 393 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 EVI5LQ96CN4 794 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 SPSB2Q99619 263 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 DDX4Q9NQI0 724 aaKnown RBP8.12□□□□□ -1.11
VPS52-219ENST00000493379 FZD1Q9UP38 647 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 SPTBN4Q9H254 2564 aa8.12□□□□□ -1.11
VPS52-219ENST00000493379 ZNF532Q9HCE3 1301 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 IDH1O75874 414 aaKnown RBP8.11□□□□□ -1.11
VPS52-219ENST00000493379 CCNYL3P0C7X3 344 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 CCL5P13501 91 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 CTHP32929 405 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 MMP16P51512 607 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 LRRFIP1Q32MZ4 808 aaKnown RBP8.11□□□□□ -1.11
VPS52-219ENST00000493379 THSD4Q6ZMP0 1018 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 ZFPM1Q8IX07 1006 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 MAGEB6Q8N7X4 407 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 HOOK2Q96ED9 719 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 DNAJC2Q99543 621 aaKnown RBP8.11□□□□□ -1.11
VPS52-219ENST00000493379 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.11□□□□□ -1.117e-7■■□□□ 13.6
VPS52-219ENST00000493379 TMEM39BQ9GZU3 492 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 DHX36Q9H2U1 1008 aaKnown RBP8.11□□□□□ -1.11
VPS52-219ENST00000493379 SEMA6BQ9H3T3 888 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 EVA1BQ9NVM1 165 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 TMOD2Q9NZR1 351 aa8.11□□□□□ -1.11
VPS52-219ENST00000493379 MAFBQ9Y5Q3 323 aaPredicted RBP8.11□□□□□ -1.11
VPS52-219ENST00000493379 SSC5DA1L4H1 1573 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 FAM86C2PA6NEL3 165 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 DDTLA6NHG4 134 aaPredicted RBP8.1□□□□□ -1.11
VPS52-219ENST00000493379 PHF20L1A8MW92 1017 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 TCP10L2B9ZVM9 353 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 RNF113AO15541 343 aaKnown RBP8.1□□□□□ -1.11
VPS52-219ENST00000493379 PPP1R12BO60237 982 aaPredicted RBP8.1□□□□□ -1.11
VPS52-219ENST00000493379 NF2P35240 595 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 RGS3P49796 1198 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 CACNB3P54284 484 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 COPS2P61201 443 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 ZMYM1Q5SVZ6 1142 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 TSHZ3Q63HK5 1081 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 B4GALNT3Q6L9W6 998 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 GIMAP6Q6P9H5 292 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 FOXP4Q8IVH2 680 aaPredicted RBP8.1□□□□□ -1.11
VPS52-219ENST00000493379 CDAN1Q8IWY9 1227 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.1□□□□□ -1.11
VPS52-219ENST00000493379 SH3RF3Q8TEJ3 882 aaPredicted RBP8.1□□□□□ -1.11
VPS52-219ENST00000493379 APPBP2Q92624 585 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 OSBP2Q969R2 916 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 STRBPQ96SI9 672 aaKnown RBP8.1□□□□□ -1.11
VPS52-219ENST00000493379 KRTAP3-3Q9BYR6 98 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 KRTAP3-2Q9BYR7 98 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 PUS7LQ9H0K6 701 aaKnown RBP8.1□□□□□ -1.11
VPS52-219ENST00000493379 OSBPL5Q9H0X9 879 aaPredicted RBP8.1□□□□□ -1.11
VPS52-219ENST00000493379 VEZTQ9HBM0 779 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 AATFQ9NY61 560 aaKnown RBP eCLIP8.1□□□□□ -1.11
VPS52-219ENST00000493379 CHD8Q9HCK8 2581 aa8.1□□□□□ -1.11
VPS52-219ENST00000493379 WDFY4Q6ZS81 3184 aa8.09□□□□□ -1.11
VPS52-219ENST00000493379 ECM29Q5VYK3 1845 aa8.09□□□□□ -1.11
VPS52-219ENST00000493379 DOCK2Q92608 1830 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms