RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 RXRAP19793 462 aa20.1■□□□□ 0.81
LIME1-208ENST00000493265 USP14P54578 494 aa20.1■□□□□ 0.81
LIME1-208ENST00000493265 KLRC3Q07444 240 aa20.1■□□□□ 0.81
LIME1-208ENST00000493265 SNAPC2Q13487 334 aa20.1■□□□□ 0.81
LIME1-208ENST00000493265 CCDC96Q2M329 555 aa20.1■□□□□ 0.81
LIME1-208ENST00000493265 USP17L2Q6R6M4 530 aa20.1■□□□□ 0.81
LIME1-208ENST00000493265 NUP88Q99567 741 aaPredicted RBP20.1■□□□□ 0.81
LIME1-208ENST00000493265 VCPKMTQ9H867 229 aa20.1■□□□□ 0.81
LIME1-208ENST00000493265 EMILIN3Q9NT22 766 aa20.1■□□□□ 0.81
LIME1-208ENST00000493265 KCNH4Q9UQ05 1017 aa20.1■□□□□ 0.81
LIME1-208ENST00000493265 MANSC4A6NHS7 340 aaPredicted RBP20.09■□□□□ 0.81
LIME1-208ENST00000493265 GOLGA8BA8MQT2 603 aa20.09■□□□□ 0.81
LIME1-208ENST00000493265 C19orf81C9J6K1 198 aa20.09■□□□□ 0.81
LIME1-208ENST00000493265 NDUFB10O96000 172 aa20.09■□□□□ 0.81
LIME1-208ENST00000493265 ALDH1A1P00352 501 aa20.09■□□□□ 0.81
LIME1-208ENST00000493265 ZBTB48P10074 688 aaPredicted RBP20.09■□□□□ 0.81
LIME1-208ENST00000493265 STK3Q13188 491 aa20.09■□□□□ 0.81
LIME1-208ENST00000493265 ANKRD1Q15327 319 aa20.09■□□□□ 0.81
LIME1-208ENST00000493265 SAMD1Q6SPF0 538 aaPredicted RBP20.09■□□□□ 0.81
LIME1-208ENST00000493265 MICU3Q86XE3 530 aa20.09■□□□□ 0.81
LIME1-208ENST00000493265 IFNL1Q8IU54 200 aa20.09■□□□□ 0.81
LIME1-208ENST00000493265 FRMPD2Q68DX3 1309 aaPredicted RBP20.08■□□□□ 0.81
LIME1-208ENST00000493265 CCL15-CCL14A0A0B4J2E2 113 aa20.08■□□□□ 0.81
LIME1-208ENST00000493265 A0A0G2JLL6 359 aaPredicted RBP20.08■□□□□ 0.81
LIME1-208ENST00000493265 GTF2A2P52657 109 aa20.08■□□□□ 0.81
LIME1-208ENST00000493265 CCL15Q16663 113 aa20.08■□□□□ 0.81
LIME1-208ENST00000493265 APOA5Q6Q788 366 aa20.08■□□□□ 0.81
LIME1-208ENST00000493265 PRRT2Q7Z6L0 340 aaPredicted RBP20.08■□□□□ 0.81
LIME1-208ENST00000493265 SGMS1Q86VZ5 419 aa20.08■□□□□ 0.81
LIME1-208ENST00000493265 GMCL1P1Q8NEA9 526 aa20.08■□□□□ 0.81
LIME1-208ENST00000493265 AGXT2Q9BYV1 514 aa20.08■□□□□ 0.81
LIME1-208ENST00000493265 ALDH8A1Q9H2A2 487 aaPredicted RBP20.08■□□□□ 0.81
LIME1-208ENST00000493265 GPCPD1Q9NPB8 672 aa20.08■□□□□ 0.81
LIME1-208ENST00000493265 IGF2BP3O00425 579 aaKnown RBP eCLIP20.07■□□□□ 0.8
LIME1-208ENST00000493265 ZBTB43O43298 467 aa20.07■□□□□ 0.8
LIME1-208ENST00000493265 CD2BP2O95400 341 aaKnown RBP20.07■□□□□ 0.8
LIME1-208ENST00000493265 GOLGA8HP0CJ92 632 aa20.07■□□□□ 0.8
LIME1-208ENST00000493265 SLC1A4P43007 532 aa20.07■□□□□ 0.8
LIME1-208ENST00000493265 FAM83BQ5T0W9 1011 aa20.07■□□□□ 0.8
LIME1-208ENST00000493265 KCTD1Q719H9 257 aa20.07■□□□□ 0.8
LIME1-208ENST00000493265 TPCN1Q9ULQ1 816 aa20.07■□□□□ 0.8
LIME1-208ENST00000493265 TRIM17Q9Y577 477 aa20.07■□□□□ 0.8
LIME1-208ENST00000493265 GOLGA8AA7E2F4 631 aa20.06■□□□□ 0.8
LIME1-208ENST00000493265 PDHBP11177 359 aa20.06■□□□□ 0.8
LIME1-208ENST00000493265 CETPP11597 493 aa20.06■□□□□ 0.8
LIME1-208ENST00000493265 VCAM1P19320 739 aa20.06■□□□□ 0.8
LIME1-208ENST00000493265 INHBEP58166 350 aa20.06■□□□□ 0.8
LIME1-208ENST00000493265 CCT2P78371 535 aaKnown RBP20.06■□□□□ 0.8
LIME1-208ENST00000493265 IKQ13123 557 aaPredicted RBP20.06■□□□□ 0.8
LIME1-208ENST00000493265 SH3D19Q5HYK7 790 aa20.06■□□□□ 0.8
LIME1-208ENST00000493265 FBXL16Q8N461 479 aa20.06■□□□□ 0.8
LIME1-208ENST00000493265 MS4A4AQ96JQ5 239 aa20.06■□□□□ 0.8
LIME1-208ENST00000493265 TANGO6Q9C0B7 1094 aa20.06■□□□□ 0.8
LIME1-208ENST00000493265 RPAP3Q9H6T3 665 aaPredicted RBP20.06■□□□□ 0.8
LIME1-208ENST00000493265 SYNPO2Q9UMS6 1093 aa20.06■□□□□ 0.8
LIME1-208ENST00000493265 DDAH1O94760 285 aa20.05■□□□□ 0.8
LIME1-208ENST00000493265 PARP1P09874 1014 aaKnown RBP20.05■□□□□ 0.8
LIME1-208ENST00000493265 BMP3P12645 472 aa20.05■□□□□ 0.8
LIME1-208ENST00000493265 METAP2P50579 478 aaKnown RBP eCLIP20.05■□□□□ 0.8
LIME1-208ENST00000493265 TROAPQ12815 778 aa20.05■□□□□ 0.8
LIME1-208ENST00000493265 TREML2Q5T2D2 321 aa20.05■□□□□ 0.8
LIME1-208ENST00000493265 FASTKD5Q7L8L6 764 aaKnown RBP20.05■□□□□ 0.8
LIME1-208ENST00000493265 CTCFLQ8NI51 663 aaPredicted RBP20.05■□□□□ 0.8
LIME1-208ENST00000493265 DCAF4Q8WV16 495 aa20.05■□□□□ 0.8
LIME1-208ENST00000493265 BRI3BPQ8WY22 251 aa20.05■□□□□ 0.8
LIME1-208ENST00000493265 LPAR1Q92633 364 aa20.05■□□□□ 0.8
LIME1-208ENST00000493265 PCDH10Q9P2E7 1040 aa20.05■□□□□ 0.8
LIME1-208ENST00000493265 PTPRFP10586 1907 aa20.04■□□□□ 0.8
LIME1-208ENST00000493265 LARGE1O95461 756 aa20.04■□□□□ 0.8
LIME1-208ENST00000493265 CALM1P0DP23 149 aa20.04■□□□□ 0.8
LIME1-208ENST00000493265 CALM2P0DP24 149 aa20.04■□□□□ 0.8
LIME1-208ENST00000493265 CALM3P0DP25 149 aa20.04■□□□□ 0.8
LIME1-208ENST00000493265 PDIA3P30101 505 aaKnown RBP20.04■□□□□ 0.8
LIME1-208ENST00000493265 OTOP1Q7RTM1 612 aa20.04■□□□□ 0.8
LIME1-208ENST00000493265 GMCL1Q96IK5 515 aa20.04■□□□□ 0.8
LIME1-208ENST00000493265 C12orf42Q96LP6 360 aa20.04■□□□□ 0.8
LIME1-208ENST00000493265 NCOA5Q9HCD5 579 aaKnown RBP20.04■□□□□ 0.8
LIME1-208ENST00000493265 LIMCH1Q9UPQ0 1083 aa20.04■□□□□ 0.8
LIME1-208ENST00000493265 TMEM232C9JQI7 657 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 WDR46O15213 610 aaKnown RBP20.03■□□□□ 0.8
LIME1-208ENST00000493265 ZNF543Q08ER8 600 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 MOGSQ13724 837 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 GRM4Q14833 912 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 RTN1Q16799 776 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 TTBK2Q6IQ55 1244 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 STAG2Q8N3U4 1231 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 NECAB1Q8N987 351 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 FANCBQ8NB91 859 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 PROCA1Q8NCQ7 364 aaPredicted RBP20.03■□□□□ 0.8
LIME1-208ENST00000493265 ZNF274Q96GC6 653 aaPredicted RBP20.03■□□□□ 0.8
LIME1-208ENST00000493265 SLKQ9H2G2 1235 aaPredicted RBP20.03■□□□□ 0.8
LIME1-208ENST00000493265 CPVLQ9H3G5 476 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 HTTP42858 3142 aa20.03■□□□□ 0.8
LIME1-208ENST00000493265 BTBD19C9JJ37 291 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 KIF5BP33176 963 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 SLC16A2P36021 539 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 CRHR2Q13324 411 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 ME3Q16798 604 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 GPAT2Q6NUI2 795 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 CMTR1Q8N1G2 835 aaKnown RBP20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms